Gene : Bradi5g08230 B. distachyon v3.1
Defline:  (1 of 2) 1.2.4.2 - Oxoglutarate dehydrogenase (succinyl-transferring) / Oxoglutarate dehydrogenase (lipoamide) Genomic Order:  776
Name:  ? Bradi5g08230 Secondary Identifier:  ? PAC:32811530
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5084 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g08230 0.5kb upstream 0.5kb upstream 12469 true Bd5: 10879108-10891576 Brachypodium distachyon
Bradi5g08230 0.5kb upstream 0.5kb upstream 500 false Bd5: 10879108-10879607 Brachypodium distachyon
Bradi5g08230 0.5kb downstream 0.5kb downstream 12469 true Bd5: 10879608-10892076 Brachypodium distachyon
Bradi5g08230 0.5kb downstream 0.5kb downstream 500 false Bd5: 10891577-10892076 Brachypodium distachyon
Bradi5g08230 1.0kb upstream 1.0kb upstream 12969 true Bd5: 10878608-10891576 Brachypodium distachyon
Bradi5g08230 1.0kb upstream 1.0kb upstream 1000 false Bd5: 10878608-10879607 Brachypodium distachyon
Bradi5g08230 1.0kb downstream 1.0kb downstream 12969 true Bd5: 10879608-10892576 Brachypodium distachyon
Bradi5g08230 1.0kb downstream 1.0kb downstream 1000 false Bd5: 10891577-10892576 Brachypodium distachyon
Bradi5g08230 2.0kb upstream 2.0kb upstream 13969 true Bd5: 10877608-10891576 Brachypodium distachyon
Bradi5g08230 2.0kb upstream 2.0kb upstream 2000 false Bd5: 10877608-10879607 Brachypodium distachyon
Bradi5g08230 2.0kb downstream 2.0kb downstream 13969 true Bd5: 10879608-10893576 Brachypodium distachyon
Bradi5g08230 2.0kb downstream 2.0kb downstream 2000 false Bd5: 10891577-10893576 Brachypodium distachyon
Bradi5g08230 5.0kb upstream 5.0kb upstream 16969 true Bd5: 10874608-10891576 Brachypodium distachyon
Bradi5g08230 5.0kb upstream 5.0kb upstream 5000 false Bd5: 10874608-10879607 Brachypodium distachyon
Bradi5g08230 5.0kb downstream 5.0kb downstream 16969 true Bd5: 10879608-10896576 Brachypodium distachyon
Bradi5g08230 5.0kb downstream 5.0kb downstream 5000 false Bd5: 10891577-10896576 Brachypodium distachyon
Bradi5g08230 10.0kb upstream 10.0kb upstream 21969 true Bd5: 10869608-10891576 Brachypodium distachyon
Bradi5g08230 10.0kb upstream 10.0kb upstream 10000 false Bd5: 10869608-10879607 Brachypodium distachyon
Bradi5g08230 10.0kb downstream 10.0kb downstream 21969 true Bd5: 10879608-10901576 Brachypodium distachyon
Bradi5g08230 10.0kb downstream 10.0kb downstream 10000 false Bd5: 10891577-10901576 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124479645 5269 Grass View MSA
122044869 5273 Angiosperm View MSA
121344749 5274 Embryophyte View MSA
123424102 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.861        
cufflinks 7.539        
cufflinks 6.566        
cufflinks 6.005        
cufflinks 2.9        
cufflinks 6.129        
cufflinks 5.546        
cufflinks 4.508        
cufflinks 5.766        
cufflinks 3.347        
cufflinks 1.859       Low
cufflinks 6.689        
cufflinks 1.719       Low
cufflinks 1.61       Low
cufflinks 4.068        
cufflinks 6.996        
cufflinks 4.388        
cufflinks 17.341     High High
cufflinks 5.411        
cufflinks 3.287        
cufflinks 5.209        
cufflinks 6.403        
cufflinks 4.752        
cufflinks 5.296        
cufflinks 5.294        
cufflinks 5.231        
cufflinks 1.772       Low
cufflinks 4.718        
cufflinks 5.356        
cufflinks 9.435       High

0 Strain