Gene : Bradi1g76850 B. distachyon v3.1
Defline:  (1 of 1) PTHR12358//PTHR12358:SF43 - SPHINGOSINE KINASE // SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  9645
Name:  ? Bradi1g76850 Secondary Identifier:  ? PAC:32797874
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7039 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi1g76850 0.5kb upstream 0.5kb upstream 4046 true Bd1: 73538882-73542927 Brachypodium distachyon
Bradi1g76850 0.5kb upstream 0.5kb upstream 500 false Bd1: 73542428-73542927 Brachypodium distachyon
Bradi1g76850 0.5kb downstream 0.5kb downstream 4046 true Bd1: 73538382-73542427 Brachypodium distachyon
Bradi1g76850 0.5kb downstream 0.5kb downstream 500 false Bd1: 73538382-73538881 Brachypodium distachyon
Bradi1g76850 1.0kb upstream 1.0kb upstream 4546 true Bd1: 73538882-73543427 Brachypodium distachyon
Bradi1g76850 1.0kb upstream 1.0kb upstream 1000 false Bd1: 73542428-73543427 Brachypodium distachyon
Bradi1g76850 1.0kb downstream 1.0kb downstream 4546 true Bd1: 73537882-73542427 Brachypodium distachyon
Bradi1g76850 1.0kb downstream 1.0kb downstream 1000 false Bd1: 73537882-73538881 Brachypodium distachyon
Bradi1g76850 2.0kb upstream 2.0kb upstream 5546 true Bd1: 73538882-73544427 Brachypodium distachyon
Bradi1g76850 2.0kb upstream 2.0kb upstream 2000 false Bd1: 73542428-73544427 Brachypodium distachyon
Bradi1g76850 2.0kb downstream 2.0kb downstream 5546 true Bd1: 73536882-73542427 Brachypodium distachyon
Bradi1g76850 2.0kb downstream 2.0kb downstream 2000 false Bd1: 73536882-73538881 Brachypodium distachyon
Bradi1g76850 5.0kb upstream 5.0kb upstream 8546 true Bd1: 73538882-73547427 Brachypodium distachyon
Bradi1g76850 5.0kb upstream 5.0kb upstream 5000 false Bd1: 73542428-73547427 Brachypodium distachyon
Bradi1g76850 5.0kb downstream 5.0kb downstream 8546 true Bd1: 73533882-73542427 Brachypodium distachyon
Bradi1g76850 5.0kb downstream 5.0kb downstream 5000 false Bd1: 73533882-73538881 Brachypodium distachyon
Bradi1g76850 10.0kb upstream 10.0kb upstream 13546 true Bd1: 73538882-73552427 Brachypodium distachyon
Bradi1g76850 10.0kb upstream 10.0kb upstream 10000 false Bd1: 73542428-73552427 Brachypodium distachyon
Bradi1g76850 10.0kb downstream 10.0kb downstream 13546 true Bd1: 73528882-73542427 Brachypodium distachyon
Bradi1g76850 10.0kb downstream 10.0kb downstream 10000 false Bd1: 73528882-73538881 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573457 5269 Grass View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.327       Low
cufflinks 11.33     High  
cufflinks 11.059     High  
cufflinks 12.652     High High
cufflinks 6.239       Low
cufflinks 8.966        
cufflinks 9.28        
cufflinks 5.906       Low
cufflinks 7.087        
cufflinks 11.301     High  
cufflinks 10.785     High  
cufflinks 7.788        
cufflinks 8.741     High  
cufflinks 9.187     High  
cufflinks 8.496        
cufflinks 8.312        
cufflinks 7.378        
cufflinks 16.702     High High
cufflinks 10.464        
cufflinks 6.251       Low
cufflinks 8.91        
cufflinks 8.573        
cufflinks 5.404       Low
cufflinks 6.109       Low
cufflinks 8.61        
cufflinks 14.221     High High
cufflinks 12.809     High High
cufflinks 12.449     High  
cufflinks 9.823        
cufflinks 7.598        

0 Strain