Gene : Bradi5g07380 B. distachyon v3.1
Defline:  (1 of 12) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  707
Name:  ? Bradi5g07380 Secondary Identifier:  ? PAC:32809916
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g07380 0.5kb upstream 0.5kb upstream 4671 true Bd5: 9966031-9970701 Brachypodium distachyon
Bradi5g07380 0.5kb upstream 0.5kb upstream 500 false Bd5: 9966031-9966530 Brachypodium distachyon
Bradi5g07380 0.5kb downstream 0.5kb downstream 4671 true Bd5: 9966531-9971201 Brachypodium distachyon
Bradi5g07380 0.5kb downstream 0.5kb downstream 500 false Bd5: 9970702-9971201 Brachypodium distachyon
Bradi5g07380 1.0kb upstream 1.0kb upstream 5171 true Bd5: 9965531-9970701 Brachypodium distachyon
Bradi5g07380 1.0kb upstream 1.0kb upstream 1000 false Bd5: 9965531-9966530 Brachypodium distachyon
Bradi5g07380 1.0kb downstream 1.0kb downstream 5171 true Bd5: 9966531-9971701 Brachypodium distachyon
Bradi5g07380 1.0kb downstream 1.0kb downstream 1000 false Bd5: 9970702-9971701 Brachypodium distachyon
Bradi5g07380 2.0kb upstream 2.0kb upstream 6171 true Bd5: 9964531-9970701 Brachypodium distachyon
Bradi5g07380 2.0kb upstream 2.0kb upstream 2000 false Bd5: 9964531-9966530 Brachypodium distachyon
Bradi5g07380 2.0kb downstream 2.0kb downstream 6171 true Bd5: 9966531-9972701 Brachypodium distachyon
Bradi5g07380 2.0kb downstream 2.0kb downstream 2000 false Bd5: 9970702-9972701 Brachypodium distachyon
Bradi5g07380 5.0kb upstream 5.0kb upstream 9171 true Bd5: 9961531-9970701 Brachypodium distachyon
Bradi5g07380 5.0kb upstream 5.0kb upstream 5000 false Bd5: 9961531-9966530 Brachypodium distachyon
Bradi5g07380 5.0kb downstream 5.0kb downstream 9171 true Bd5: 9966531-9975701 Brachypodium distachyon
Bradi5g07380 5.0kb downstream 5.0kb downstream 5000 false Bd5: 9970702-9975701 Brachypodium distachyon
Bradi5g07380 10.0kb upstream 10.0kb upstream 14171 true Bd5: 9956531-9970701 Brachypodium distachyon
Bradi5g07380 10.0kb upstream 10.0kb upstream 10000 false Bd5: 9956531-9966530 Brachypodium distachyon
Bradi5g07380 10.0kb downstream 10.0kb downstream 14171 true Bd5: 9966531-9980701 Brachypodium distachyon
Bradi5g07380 10.0kb downstream 10.0kb downstream 10000 false Bd5: 9970702-9980701 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573617 5269 Grass View MSA
122048165 5273 Angiosperm View MSA
121344169 5274 Embryophyte View MSA
123379991 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.653        
cufflinks 3.733        
cufflinks 4.006        
cufflinks 3.586        
cufflinks 2.811        
cufflinks 3.883        
cufflinks 3.509        
cufflinks 2.879        
cufflinks 3.281        
cufflinks 3.038        
cufflinks 3.834        
cufflinks 5.659        
cufflinks 4.498        
cufflinks 2.77        
cufflinks 6.017        
cufflinks 3.16        
cufflinks 4.657        
cufflinks 13.224     High High
cufflinks 5.683        
cufflinks 1.536       Low
cufflinks 3.227        
cufflinks 3.297        
cufflinks 2.559        
cufflinks 3.504        
cufflinks 2.951        
cufflinks 3.706        
cufflinks 7.506       High
cufflinks 3.416        
cufflinks 3.155        
cufflinks 7.018       High

0 Strain