Gene : Bradi2g00890 B. distachyon v3.1
Defline:  (1 of 2) 2.3.1.9 - Acetyl-CoA C-acetyltransferase / Acetoacetyl-CoA thiolase Genomic Order:  98
Name:  ? Bradi2g00890 Secondary Identifier:  ? PAC:32771108
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ILEUDEG-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-5910 Brachypodium distachyon pathologic  
Bdistachyon PWY-922 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g00890 0.5kb upstream 0.5kb upstream 4906 true Bd2: 548708-553613 Brachypodium distachyon
Bradi2g00890 0.5kb upstream 0.5kb upstream 500 false Bd2: 548708-549207 Brachypodium distachyon
Bradi2g00890 0.5kb downstream 0.5kb downstream 4906 true Bd2: 549208-554113 Brachypodium distachyon
Bradi2g00890 0.5kb downstream 0.5kb downstream 500 false Bd2: 553614-554113 Brachypodium distachyon
Bradi2g00890 1.0kb upstream 1.0kb upstream 5406 true Bd2: 548208-553613 Brachypodium distachyon
Bradi2g00890 1.0kb upstream 1.0kb upstream 1000 false Bd2: 548208-549207 Brachypodium distachyon
Bradi2g00890 1.0kb downstream 1.0kb downstream 5406 true Bd2: 549208-554613 Brachypodium distachyon
Bradi2g00890 1.0kb downstream 1.0kb downstream 1000 false Bd2: 553614-554613 Brachypodium distachyon
Bradi2g00890 2.0kb upstream 2.0kb upstream 6406 true Bd2: 547208-553613 Brachypodium distachyon
Bradi2g00890 2.0kb upstream 2.0kb upstream 2000 false Bd2: 547208-549207 Brachypodium distachyon
Bradi2g00890 2.0kb downstream 2.0kb downstream 6406 true Bd2: 549208-555613 Brachypodium distachyon
Bradi2g00890 2.0kb downstream 2.0kb downstream 2000 false Bd2: 553614-555613 Brachypodium distachyon
Bradi2g00890 5.0kb upstream 5.0kb upstream 9406 true Bd2: 544208-553613 Brachypodium distachyon
Bradi2g00890 5.0kb upstream 5.0kb upstream 5000 false Bd2: 544208-549207 Brachypodium distachyon
Bradi2g00890 5.0kb downstream 5.0kb downstream 9406 true Bd2: 549208-558613 Brachypodium distachyon
Bradi2g00890 5.0kb downstream 5.0kb downstream 5000 false Bd2: 553614-558613 Brachypodium distachyon
Bradi2g00890 10.0kb upstream 10.0kb upstream 14406 true Bd2: 539208-553613 Brachypodium distachyon
Bradi2g00890 10.0kb upstream 10.0kb upstream 10000 false Bd2: 539208-549207 Brachypodium distachyon
Bradi2g00890 10.0kb downstream 10.0kb downstream 14406 true Bd2: 549208-563613 Brachypodium distachyon
Bradi2g00890 10.0kb downstream 10.0kb downstream 10000 false Bd2: 553614-563613 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570136 5269 Grass View MSA
122045789 5273 Angiosperm View MSA
121344005 5274 Embryophyte View MSA
123427573 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.541        
cufflinks 3.845        
cufflinks 4.983        
cufflinks 3.824        
cufflinks 5.829        
cufflinks 3.603        
cufflinks 3.724        
cufflinks 3.607        
cufflinks 3.533        
cufflinks 3.961        
cufflinks 4.071        
cufflinks 3.375        
cufflinks 3.335        
cufflinks 2.972       Low
cufflinks 3.759        
cufflinks 3.875        
cufflinks 5.291        
cufflinks 7.334        
cufflinks 15.609     High High
cufflinks 19.07     High High
cufflinks 7.215        
cufflinks 4.313        
cufflinks 3.87        
cufflinks 3.422        
cufflinks 3.26        
cufflinks 5.52        
cufflinks 4.14        
cufflinks 5.382        
cufflinks 4.559        
cufflinks 5.247        

0 Strain