Gene : Bradi2g01511 B. distachyon v3.1
Defline:  (1 of 1) PTHR11777:SF7 - THREONYL AND ALANYL TRNA SYNTHETASE SECOND ADDITIONAL DOMAIN-CONTAINING PROTEIN Genomic Order:  184
Name:  ? Bradi2g01511 Secondary Identifier:  ? PAC:32781929
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g01511 0.5kb upstream 0.5kb upstream 3760 true Bd2: 1051804-1055563 Brachypodium distachyon
Bradi2g01511 0.5kb upstream 0.5kb upstream 500 false Bd2: 1055064-1055563 Brachypodium distachyon
Bradi2g01511 0.5kb downstream 0.5kb downstream 3760 true Bd2: 1051304-1055063 Brachypodium distachyon
Bradi2g01511 0.5kb downstream 0.5kb downstream 500 false Bd2: 1051304-1051803 Brachypodium distachyon
Bradi2g01511 1.0kb upstream 1.0kb upstream 4260 true Bd2: 1051804-1056063 Brachypodium distachyon
Bradi2g01511 1.0kb upstream 1.0kb upstream 1000 false Bd2: 1055064-1056063 Brachypodium distachyon
Bradi2g01511 1.0kb downstream 1.0kb downstream 4260 true Bd2: 1050804-1055063 Brachypodium distachyon
Bradi2g01511 1.0kb downstream 1.0kb downstream 1000 false Bd2: 1050804-1051803 Brachypodium distachyon
Bradi2g01511 2.0kb upstream 2.0kb upstream 5260 true Bd2: 1051804-1057063 Brachypodium distachyon
Bradi2g01511 2.0kb upstream 2.0kb upstream 2000 false Bd2: 1055064-1057063 Brachypodium distachyon
Bradi2g01511 2.0kb downstream 2.0kb downstream 5260 true Bd2: 1049804-1055063 Brachypodium distachyon
Bradi2g01511 2.0kb downstream 2.0kb downstream 2000 false Bd2: 1049804-1051803 Brachypodium distachyon
Bradi2g01511 5.0kb upstream 5.0kb upstream 8260 true Bd2: 1051804-1060063 Brachypodium distachyon
Bradi2g01511 5.0kb upstream 5.0kb upstream 5000 false Bd2: 1055064-1060063 Brachypodium distachyon
Bradi2g01511 5.0kb downstream 5.0kb downstream 8260 true Bd2: 1046804-1055063 Brachypodium distachyon
Bradi2g01511 5.0kb downstream 5.0kb downstream 5000 false Bd2: 1046804-1051803 Brachypodium distachyon
Bradi2g01511 10.0kb upstream 10.0kb upstream 13260 true Bd2: 1051804-1065063 Brachypodium distachyon
Bradi2g01511 10.0kb upstream 10.0kb upstream 10000 false Bd2: 1055064-1065063 Brachypodium distachyon
Bradi2g01511 10.0kb downstream 10.0kb downstream 13260 true Bd2: 1041804-1055063 Brachypodium distachyon
Bradi2g01511 10.0kb downstream 10.0kb downstream 10000 false Bd2: 1041804-1051803 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041267 5273 Angiosperm View MSA
124575580 5269 Grass View MSA
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.552     High  
cufflinks 5.729        
cufflinks 9.264        
cufflinks 8.078        
cufflinks 8.618        
cufflinks 3.692       Low
cufflinks 4.705       Low
cufflinks 5.657        
cufflinks 4.454       Low
cufflinks 12.514     High  
cufflinks 10.655     High  
cufflinks 4.086       Low
cufflinks 4.791       Low
cufflinks 7.117        
cufflinks 11.389     High  
cufflinks 4.292       Low
cufflinks 9.669        
cufflinks 12.15     High  
cufflinks 18.415     High High
cufflinks 15.581     High High
cufflinks 10.783        
cufflinks 7.448        
cufflinks 7.268        
cufflinks 4.196       Low
cufflinks 4.722       Low
cufflinks 13.664     High High
cufflinks 9.1     High  
cufflinks 13.016     High  
cufflinks 11.105     High  
cufflinks 4.964       Low

0 Strain