Gene : Bradi2g02770 B. distachyon v3.1
Defline:  (1 of 1) PTHR31412//PTHR31412:SF5 - FAMILY NOT NAMED // ZINC METALLOPROTEASE EGY2, CHLOROPLASTIC-RELATED Genomic Order:  346
Name:  ? Bradi2g02770 Secondary Identifier:  ? PAC:32779916
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g02770 0.5kb upstream 0.5kb upstream 5869 true Bd2: 1964221-1970089 Brachypodium distachyon
Bradi2g02770 0.5kb upstream 0.5kb upstream 500 false Bd2: 1969590-1970089 Brachypodium distachyon
Bradi2g02770 0.5kb downstream 0.5kb downstream 5869 true Bd2: 1963721-1969589 Brachypodium distachyon
Bradi2g02770 0.5kb downstream 0.5kb downstream 500 false Bd2: 1963721-1964220 Brachypodium distachyon
Bradi2g02770 1.0kb upstream 1.0kb upstream 6369 true Bd2: 1964221-1970589 Brachypodium distachyon
Bradi2g02770 1.0kb upstream 1.0kb upstream 1000 false Bd2: 1969590-1970589 Brachypodium distachyon
Bradi2g02770 1.0kb downstream 1.0kb downstream 6369 true Bd2: 1963221-1969589 Brachypodium distachyon
Bradi2g02770 1.0kb downstream 1.0kb downstream 1000 false Bd2: 1963221-1964220 Brachypodium distachyon
Bradi2g02770 2.0kb upstream 2.0kb upstream 7369 true Bd2: 1964221-1971589 Brachypodium distachyon
Bradi2g02770 2.0kb upstream 2.0kb upstream 2000 false Bd2: 1969590-1971589 Brachypodium distachyon
Bradi2g02770 2.0kb downstream 2.0kb downstream 7369 true Bd2: 1962221-1969589 Brachypodium distachyon
Bradi2g02770 2.0kb downstream 2.0kb downstream 2000 false Bd2: 1962221-1964220 Brachypodium distachyon
Bradi2g02770 5.0kb upstream 5.0kb upstream 10369 true Bd2: 1964221-1974589 Brachypodium distachyon
Bradi2g02770 5.0kb upstream 5.0kb upstream 5000 false Bd2: 1969590-1974589 Brachypodium distachyon
Bradi2g02770 5.0kb downstream 5.0kb downstream 10369 true Bd2: 1959221-1969589 Brachypodium distachyon
Bradi2g02770 5.0kb downstream 5.0kb downstream 5000 false Bd2: 1959221-1964220 Brachypodium distachyon
Bradi2g02770 10.0kb upstream 10.0kb upstream 15369 true Bd2: 1964221-1979589 Brachypodium distachyon
Bradi2g02770 10.0kb upstream 10.0kb upstream 10000 false Bd2: 1969590-1979589 Brachypodium distachyon
Bradi2g02770 10.0kb downstream 10.0kb downstream 15369 true Bd2: 1954221-1969589 Brachypodium distachyon
Bradi2g02770 10.0kb downstream 10.0kb downstream 10000 false Bd2: 1954221-1964220 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573045 5269 Grass View MSA
122044367 5273 Angiosperm View MSA
121345535 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.525        
cufflinks 5.488       High
cufflinks 4.601        
cufflinks 5.413        
cufflinks 2.045        
cufflinks 4.619        
cufflinks 4.868        
cufflinks 3.44        
cufflinks 4.174        
cufflinks 2.818        
cufflinks 5.441        
cufflinks 3.787        
cufflinks 3.596        
cufflinks 4.943        
cufflinks 2.791        
cufflinks 4.712        
cufflinks 2.34        
cufflinks 0.46       Low
cufflinks 1.457        
cufflinks 0.661       Low
cufflinks 1.141       Low
cufflinks 3.749        
cufflinks 3.286        
cufflinks 3.954        
cufflinks 4.255        
cufflinks 3.979        
cufflinks 3.462        
cufflinks 3.693        
cufflinks 3.76        
cufflinks 2.628        

0 Strain