Gene : Bradi2g07490 B. distachyon v3.1
Defline:  (1 of 1) PTHR23249//PTHR23249:SF16 - SYNBINDIN // TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 Genomic Order:  951
Name:  ? Bradi2g07490 Secondary Identifier:  ? PAC:32771290
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g07490 0.5kb upstream 0.5kb upstream 4860 true Bd2: 5832977-5837836 Brachypodium distachyon
Bradi2g07490 0.5kb upstream 0.5kb upstream 500 false Bd2: 5832977-5833476 Brachypodium distachyon
Bradi2g07490 0.5kb downstream 0.5kb downstream 4860 true Bd2: 5833477-5838336 Brachypodium distachyon
Bradi2g07490 0.5kb downstream 0.5kb downstream 500 false Bd2: 5837837-5838336 Brachypodium distachyon
Bradi2g07490 1.0kb upstream 1.0kb upstream 5360 true Bd2: 5832477-5837836 Brachypodium distachyon
Bradi2g07490 1.0kb upstream 1.0kb upstream 1000 false Bd2: 5832477-5833476 Brachypodium distachyon
Bradi2g07490 1.0kb downstream 1.0kb downstream 5360 true Bd2: 5833477-5838836 Brachypodium distachyon
Bradi2g07490 1.0kb downstream 1.0kb downstream 1000 false Bd2: 5837837-5838836 Brachypodium distachyon
Bradi2g07490 2.0kb upstream 2.0kb upstream 6360 true Bd2: 5831477-5837836 Brachypodium distachyon
Bradi2g07490 2.0kb upstream 2.0kb upstream 2000 false Bd2: 5831477-5833476 Brachypodium distachyon
Bradi2g07490 2.0kb downstream 2.0kb downstream 6360 true Bd2: 5833477-5839836 Brachypodium distachyon
Bradi2g07490 2.0kb downstream 2.0kb downstream 2000 false Bd2: 5837837-5839836 Brachypodium distachyon
Bradi2g07490 5.0kb upstream 5.0kb upstream 9360 true Bd2: 5828477-5837836 Brachypodium distachyon
Bradi2g07490 5.0kb upstream 5.0kb upstream 5000 false Bd2: 5828477-5833476 Brachypodium distachyon
Bradi2g07490 5.0kb downstream 5.0kb downstream 9360 true Bd2: 5833477-5842836 Brachypodium distachyon
Bradi2g07490 5.0kb downstream 5.0kb downstream 5000 false Bd2: 5837837-5842836 Brachypodium distachyon
Bradi2g07490 10.0kb upstream 10.0kb upstream 14360 true Bd2: 5823477-5837836 Brachypodium distachyon
Bradi2g07490 10.0kb upstream 10.0kb upstream 10000 false Bd2: 5823477-5833476 Brachypodium distachyon
Bradi2g07490 10.0kb downstream 10.0kb downstream 14360 true Bd2: 5833477-5847836 Brachypodium distachyon
Bradi2g07490 10.0kb downstream 10.0kb downstream 10000 false Bd2: 5837837-5847836 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026490 5273 Angiosperm View MSA
124578248 5269 Grass View MSA
121344291 5274 Embryophyte View MSA
123427363 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.457        
cufflinks 3.368        
cufflinks 3.327        
cufflinks 4.113        
cufflinks 3.605        
cufflinks 3.307        
cufflinks 3.435        
cufflinks 3.044        
cufflinks 3.352        
cufflinks 3.073        
cufflinks 1.752       Low
cufflinks 2.777        
cufflinks 1.181       Low
cufflinks 1.566       Low
cufflinks 2.206        
cufflinks 3.508        
cufflinks 4.82        
cufflinks 6.472       High
cufflinks 5.484       High
cufflinks 1.842       Low
cufflinks 6.753       High
cufflinks 2.95        
cufflinks 3.195        
cufflinks 3.717        
cufflinks 3.326        
cufflinks 3.755        
cufflinks 1.435       Low
cufflinks 3.041        
cufflinks 3.287        
cufflinks 6.17       High

0 Strain