Gene : Bradi2g08390 B. distachyon v3.1
Defline:  (1 of 3) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase Genomic Order:  1069
Name:  ? Bradi2g08390 Secondary Identifier:  ? PAC:32781388
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g08390 0.5kb upstream 0.5kb upstream 6399 true Bd2: 6796894-6803292 Brachypodium distachyon
Bradi2g08390 0.5kb upstream 0.5kb upstream 500 false Bd2: 6802793-6803292 Brachypodium distachyon
Bradi2g08390 0.5kb downstream 0.5kb downstream 6399 true Bd2: 6796394-6802792 Brachypodium distachyon
Bradi2g08390 0.5kb downstream 0.5kb downstream 500 false Bd2: 6796394-6796893 Brachypodium distachyon
Bradi2g08390 1.0kb upstream 1.0kb upstream 6899 true Bd2: 6796894-6803792 Brachypodium distachyon
Bradi2g08390 1.0kb upstream 1.0kb upstream 1000 false Bd2: 6802793-6803792 Brachypodium distachyon
Bradi2g08390 1.0kb downstream 1.0kb downstream 6899 true Bd2: 6795894-6802792 Brachypodium distachyon
Bradi2g08390 1.0kb downstream 1.0kb downstream 1000 false Bd2: 6795894-6796893 Brachypodium distachyon
Bradi2g08390 2.0kb upstream 2.0kb upstream 7899 true Bd2: 6796894-6804792 Brachypodium distachyon
Bradi2g08390 2.0kb upstream 2.0kb upstream 2000 false Bd2: 6802793-6804792 Brachypodium distachyon
Bradi2g08390 2.0kb downstream 2.0kb downstream 7899 true Bd2: 6794894-6802792 Brachypodium distachyon
Bradi2g08390 2.0kb downstream 2.0kb downstream 2000 false Bd2: 6794894-6796893 Brachypodium distachyon
Bradi2g08390 5.0kb upstream 5.0kb upstream 10899 true Bd2: 6796894-6807792 Brachypodium distachyon
Bradi2g08390 5.0kb upstream 5.0kb upstream 5000 false Bd2: 6802793-6807792 Brachypodium distachyon
Bradi2g08390 5.0kb downstream 5.0kb downstream 10899 true Bd2: 6791894-6802792 Brachypodium distachyon
Bradi2g08390 5.0kb downstream 5.0kb downstream 5000 false Bd2: 6791894-6796893 Brachypodium distachyon
Bradi2g08390 10.0kb upstream 10.0kb upstream 15899 true Bd2: 6796894-6812792 Brachypodium distachyon
Bradi2g08390 10.0kb upstream 10.0kb upstream 10000 false Bd2: 6802793-6812792 Brachypodium distachyon
Bradi2g08390 10.0kb downstream 10.0kb downstream 15899 true Bd2: 6786894-6802792 Brachypodium distachyon
Bradi2g08390 10.0kb downstream 10.0kb downstream 10000 false Bd2: 6786894-6796893 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584532 5269 Grass View MSA
122047618 5273 Angiosperm View MSA
121344832 5274 Embryophyte View MSA
123424388 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.519     High  
cufflinks 24.868     High High
cufflinks 24.405     High High
cufflinks 19.165     High  
cufflinks 5.222       Low
cufflinks 21.077     High  
cufflinks 18.823     High  
cufflinks 16.71     High  
cufflinks 18.563     High  
cufflinks 9.115        
cufflinks 12.598     High  
cufflinks 20.263     High  
cufflinks 7.993     High Low
cufflinks 8.029     High Low
cufflinks 9.821     High  
cufflinks 19.771     High  
cufflinks 8.505        
cufflinks 24.71     High High
cufflinks 10.328        
cufflinks 7.392       Low
cufflinks 15.396     High  
cufflinks 19.336     High  
cufflinks 16.615     High  
cufflinks 17.734     High  
cufflinks 17.213     High  
cufflinks 17.919     High  
cufflinks 10.355     High  
cufflinks 17.688     High  
cufflinks 18.021     High  
cufflinks 25.745     High High

0 Strain