Gene : Bradi2g08900 B. distachyon v3.1
Defline:  (1 of 3) 6.1.1.11 - Serine--tRNA ligase / Seryl-tRNA synthetase Genomic Order:  1144
Name:  ? Bradi2g08900 Secondary Identifier:  ? PAC:32771591
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g08900 0.5kb upstream 0.5kb upstream 8225 true Bd2: 7221691-7229915 Brachypodium distachyon
Bradi2g08900 0.5kb upstream 0.5kb upstream 500 false Bd2: 7221691-7222190 Brachypodium distachyon
Bradi2g08900 0.5kb downstream 0.5kb downstream 8225 true Bd2: 7222191-7230415 Brachypodium distachyon
Bradi2g08900 0.5kb downstream 0.5kb downstream 500 false Bd2: 7229916-7230415 Brachypodium distachyon
Bradi2g08900 1.0kb upstream 1.0kb upstream 8725 true Bd2: 7221191-7229915 Brachypodium distachyon
Bradi2g08900 1.0kb upstream 1.0kb upstream 1000 false Bd2: 7221191-7222190 Brachypodium distachyon
Bradi2g08900 1.0kb downstream 1.0kb downstream 8725 true Bd2: 7222191-7230915 Brachypodium distachyon
Bradi2g08900 1.0kb downstream 1.0kb downstream 1000 false Bd2: 7229916-7230915 Brachypodium distachyon
Bradi2g08900 2.0kb upstream 2.0kb upstream 9725 true Bd2: 7220191-7229915 Brachypodium distachyon
Bradi2g08900 2.0kb upstream 2.0kb upstream 2000 false Bd2: 7220191-7222190 Brachypodium distachyon
Bradi2g08900 2.0kb downstream 2.0kb downstream 9725 true Bd2: 7222191-7231915 Brachypodium distachyon
Bradi2g08900 2.0kb downstream 2.0kb downstream 2000 false Bd2: 7229916-7231915 Brachypodium distachyon
Bradi2g08900 5.0kb upstream 5.0kb upstream 12725 true Bd2: 7217191-7229915 Brachypodium distachyon
Bradi2g08900 5.0kb upstream 5.0kb upstream 5000 false Bd2: 7217191-7222190 Brachypodium distachyon
Bradi2g08900 5.0kb downstream 5.0kb downstream 12725 true Bd2: 7222191-7234915 Brachypodium distachyon
Bradi2g08900 5.0kb downstream 5.0kb downstream 5000 false Bd2: 7229916-7234915 Brachypodium distachyon
Bradi2g08900 10.0kb upstream 10.0kb upstream 17725 true Bd2: 7212191-7229915 Brachypodium distachyon
Bradi2g08900 10.0kb upstream 10.0kb upstream 10000 false Bd2: 7212191-7222190 Brachypodium distachyon
Bradi2g08900 10.0kb downstream 10.0kb downstream 17725 true Bd2: 7222191-7239915 Brachypodium distachyon
Bradi2g08900 10.0kb downstream 10.0kb downstream 10000 false Bd2: 7229916-7239915 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589180 5269 Grass View MSA
122041756 5273 Angiosperm View MSA
121347508 5274 Embryophyte View MSA
123423893 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.505        
cufflinks 8.142        
cufflinks 7.541        
cufflinks 8.168        
cufflinks 5.509        
cufflinks 7.217        
cufflinks 6.575        
cufflinks 5.889        
cufflinks 6.395        
cufflinks 5.188        
cufflinks 3.423       Low
cufflinks 6.658        
cufflinks 2.649       Low
cufflinks 3.046       Low
cufflinks 6.848        
cufflinks 6.861        
cufflinks 9.018       High
cufflinks 9.106       High
cufflinks 4.66        
cufflinks 2.604       Low
cufflinks 6.335        
cufflinks 5.816        
cufflinks 5.435        
cufflinks 5.923        
cufflinks 6.717        
cufflinks 6.407        
cufflinks 3.507       Low
cufflinks 6.167        
cufflinks 5.874        
cufflinks 8.747       High

0 Strain