Gene : Bradi2g08980 B. distachyon v3.1
Defline:  (1 of 2) PTHR23198:SF4 - NUCLEOPORIN AUTOPEPTIDASE Genomic Order:  1154
Name:  ? Bradi2g08980 Secondary Identifier:  ? PAC:32782186
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g08980 0.5kb upstream 0.5kb upstream 4180 true Bd2: 7273280-7277459 Brachypodium distachyon
Bradi2g08980 0.5kb upstream 0.5kb upstream 500 false Bd2: 7276960-7277459 Brachypodium distachyon
Bradi2g08980 0.5kb downstream 0.5kb downstream 4180 true Bd2: 7272780-7276959 Brachypodium distachyon
Bradi2g08980 0.5kb downstream 0.5kb downstream 500 false Bd2: 7272780-7273279 Brachypodium distachyon
Bradi2g08980 1.0kb upstream 1.0kb upstream 4680 true Bd2: 7273280-7277959 Brachypodium distachyon
Bradi2g08980 1.0kb upstream 1.0kb upstream 1000 false Bd2: 7276960-7277959 Brachypodium distachyon
Bradi2g08980 1.0kb downstream 1.0kb downstream 4680 true Bd2: 7272280-7276959 Brachypodium distachyon
Bradi2g08980 1.0kb downstream 1.0kb downstream 1000 false Bd2: 7272280-7273279 Brachypodium distachyon
Bradi2g08980 2.0kb upstream 2.0kb upstream 5680 true Bd2: 7273280-7278959 Brachypodium distachyon
Bradi2g08980 2.0kb upstream 2.0kb upstream 2000 false Bd2: 7276960-7278959 Brachypodium distachyon
Bradi2g08980 2.0kb downstream 2.0kb downstream 5680 true Bd2: 7271280-7276959 Brachypodium distachyon
Bradi2g08980 2.0kb downstream 2.0kb downstream 2000 false Bd2: 7271280-7273279 Brachypodium distachyon
Bradi2g08980 5.0kb upstream 5.0kb upstream 8680 true Bd2: 7273280-7281959 Brachypodium distachyon
Bradi2g08980 5.0kb upstream 5.0kb upstream 5000 false Bd2: 7276960-7281959 Brachypodium distachyon
Bradi2g08980 5.0kb downstream 5.0kb downstream 8680 true Bd2: 7268280-7276959 Brachypodium distachyon
Bradi2g08980 5.0kb downstream 5.0kb downstream 5000 false Bd2: 7268280-7273279 Brachypodium distachyon
Bradi2g08980 10.0kb upstream 10.0kb upstream 13680 true Bd2: 7273280-7286959 Brachypodium distachyon
Bradi2g08980 10.0kb upstream 10.0kb upstream 10000 false Bd2: 7276960-7286959 Brachypodium distachyon
Bradi2g08980 10.0kb downstream 10.0kb downstream 13680 true Bd2: 7263280-7276959 Brachypodium distachyon
Bradi2g08980 10.0kb downstream 10.0kb downstream 10000 false Bd2: 7263280-7273279 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574361 5269 Grass View MSA
122041710 5273 Angiosperm View MSA
121349617 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.248     High  
cufflinks 20.904     High  
cufflinks 27.213     High High
cufflinks 14.501     High  
cufflinks 6.17       Low
cufflinks 17.694     High  
cufflinks 17.899     High  
cufflinks 16.657     High  
cufflinks 16.347     High  
cufflinks 14.94     High  
cufflinks 20.438     High  
cufflinks 18.112     High  
cufflinks 13.909     High  
cufflinks 12.417     High  
cufflinks 8.105       Low
cufflinks 20.916     High  
cufflinks 10.032        
cufflinks 24.587     High High
cufflinks 17.642     High  
cufflinks 5.75       Low
cufflinks 15.857     High  
cufflinks 24.591     High High
cufflinks 15.703     High  
cufflinks 14.702     High  
cufflinks 14.034     High  
cufflinks 23.194     High  
cufflinks 14.089     High  
cufflinks 23.074     High  
cufflinks 22.803     High  
cufflinks 20.052     High  

0 Strain