Gene : Bradi5g02890 B. distachyon v3.1
Defline:  (1 of 2) PTHR11353:SF11 - CHAPERONIN 60 SUBUNIT ALPHA 1, CHLOROPLASTIC Genomic Order:  321
Name:  ? Bradi5g02890 Secondary Identifier:  ? PAC:32808753
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g02890 0.5kb upstream 0.5kb upstream 5651 true Bd5: 3161905-3167555 Brachypodium distachyon
Bradi5g02890 0.5kb upstream 0.5kb upstream 500 false Bd5: 3161905-3162404 Brachypodium distachyon
Bradi5g02890 0.5kb downstream 0.5kb downstream 5651 true Bd5: 3162405-3168055 Brachypodium distachyon
Bradi5g02890 0.5kb downstream 0.5kb downstream 500 false Bd5: 3167556-3168055 Brachypodium distachyon
Bradi5g02890 1.0kb upstream 1.0kb upstream 6151 true Bd5: 3161405-3167555 Brachypodium distachyon
Bradi5g02890 1.0kb upstream 1.0kb upstream 1000 false Bd5: 3161405-3162404 Brachypodium distachyon
Bradi5g02890 1.0kb downstream 1.0kb downstream 6151 true Bd5: 3162405-3168555 Brachypodium distachyon
Bradi5g02890 1.0kb downstream 1.0kb downstream 1000 false Bd5: 3167556-3168555 Brachypodium distachyon
Bradi5g02890 2.0kb upstream 2.0kb upstream 7151 true Bd5: 3160405-3167555 Brachypodium distachyon
Bradi5g02890 2.0kb upstream 2.0kb upstream 2000 false Bd5: 3160405-3162404 Brachypodium distachyon
Bradi5g02890 2.0kb downstream 2.0kb downstream 7151 true Bd5: 3162405-3169555 Brachypodium distachyon
Bradi5g02890 2.0kb downstream 2.0kb downstream 2000 false Bd5: 3167556-3169555 Brachypodium distachyon
Bradi5g02890 5.0kb upstream 5.0kb upstream 10151 true Bd5: 3157405-3167555 Brachypodium distachyon
Bradi5g02890 5.0kb upstream 5.0kb upstream 5000 false Bd5: 3157405-3162404 Brachypodium distachyon
Bradi5g02890 5.0kb downstream 5.0kb downstream 10151 true Bd5: 3162405-3172555 Brachypodium distachyon
Bradi5g02890 5.0kb downstream 5.0kb downstream 5000 false Bd5: 3167556-3172555 Brachypodium distachyon
Bradi5g02890 10.0kb upstream 10.0kb upstream 15151 true Bd5: 3152405-3167555 Brachypodium distachyon
Bradi5g02890 10.0kb upstream 10.0kb upstream 10000 false Bd5: 3152405-3162404 Brachypodium distachyon
Bradi5g02890 10.0kb downstream 10.0kb downstream 15151 true Bd5: 3162405-3177555 Brachypodium distachyon
Bradi5g02890 10.0kb downstream 10.0kb downstream 10000 false Bd5: 3167556-3177555 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572004 5269 Grass View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 249.907     High  
cufflinks 284.002     High  
cufflinks 276.338     High  
cufflinks 286.748     High  
cufflinks 183.244     High  
cufflinks 243.842     High  
cufflinks 244.646     High  
cufflinks 202.054     High  
cufflinks 202.104     High  
cufflinks 209.102     High  
cufflinks 92.6     High  
cufflinks 243.135     High  
cufflinks 58.366     High Low
cufflinks 66.643     High  
cufflinks 203.307     High  
cufflinks 259.708     High  
cufflinks 227.106     High  
cufflinks 25.924     High Low
cufflinks 114.655     High  
cufflinks 22.902     High Low
cufflinks 99.955     High  
cufflinks 246.605     High  
cufflinks 189.849     High  
cufflinks 196.139     High  
cufflinks 215.004     High  
cufflinks 238.674     High  
cufflinks 21.324     High Low
cufflinks 217.496     High  
cufflinks 233.731     High  
cufflinks 256.326     High  

0 Strain