Gene : Bradi2g04780 B. distachyon v3.1
Defline:  (1 of 1) PTHR33427//PTHR33427:SF2 - FAMILY NOT NAMED // GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MQD17 Genomic Order:  619
Name:  ? Bradi2g04780 Secondary Identifier:  ? PAC:32775195
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g04780 0.5kb upstream 0.5kb upstream 3817 true Bd2: 3405925-3409741 Brachypodium distachyon
Bradi2g04780 0.5kb upstream 0.5kb upstream 500 false Bd2: 3409242-3409741 Brachypodium distachyon
Bradi2g04780 0.5kb downstream 0.5kb downstream 3817 true Bd2: 3405425-3409241 Brachypodium distachyon
Bradi2g04780 0.5kb downstream 0.5kb downstream 500 false Bd2: 3405425-3405924 Brachypodium distachyon
Bradi2g04780 1.0kb upstream 1.0kb upstream 4317 true Bd2: 3405925-3410241 Brachypodium distachyon
Bradi2g04780 1.0kb upstream 1.0kb upstream 1000 false Bd2: 3409242-3410241 Brachypodium distachyon
Bradi2g04780 1.0kb downstream 1.0kb downstream 4317 true Bd2: 3404925-3409241 Brachypodium distachyon
Bradi2g04780 1.0kb downstream 1.0kb downstream 1000 false Bd2: 3404925-3405924 Brachypodium distachyon
Bradi2g04780 2.0kb upstream 2.0kb upstream 5317 true Bd2: 3405925-3411241 Brachypodium distachyon
Bradi2g04780 2.0kb upstream 2.0kb upstream 2000 false Bd2: 3409242-3411241 Brachypodium distachyon
Bradi2g04780 2.0kb downstream 2.0kb downstream 5317 true Bd2: 3403925-3409241 Brachypodium distachyon
Bradi2g04780 2.0kb downstream 2.0kb downstream 2000 false Bd2: 3403925-3405924 Brachypodium distachyon
Bradi2g04780 5.0kb upstream 5.0kb upstream 8317 true Bd2: 3405925-3414241 Brachypodium distachyon
Bradi2g04780 5.0kb upstream 5.0kb upstream 5000 false Bd2: 3409242-3414241 Brachypodium distachyon
Bradi2g04780 5.0kb downstream 5.0kb downstream 8317 true Bd2: 3400925-3409241 Brachypodium distachyon
Bradi2g04780 5.0kb downstream 5.0kb downstream 5000 false Bd2: 3400925-3405924 Brachypodium distachyon
Bradi2g04780 10.0kb upstream 10.0kb upstream 13317 true Bd2: 3405925-3419241 Brachypodium distachyon
Bradi2g04780 10.0kb upstream 10.0kb upstream 10000 false Bd2: 3409242-3419241 Brachypodium distachyon
Bradi2g04780 10.0kb downstream 10.0kb downstream 13317 true Bd2: 3395925-3409241 Brachypodium distachyon
Bradi2g04780 10.0kb downstream 10.0kb downstream 10000 false Bd2: 3395925-3405924 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580093 5269 Grass View MSA
122044746 5273 Angiosperm View MSA
121349480 5274 Embryophyte View MSA
123381326 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.638        
cufflinks 7.967        
cufflinks 9.209        
cufflinks 6.947        
cufflinks 1.848        
cufflinks 7.039        
cufflinks 7.176        
cufflinks 6.459        
cufflinks 4.854        
cufflinks 4.896        
cufflinks 0.01     Low Low
cufflinks 5.351        
cufflinks 0.028     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.355        
cufflinks 8.396        
cufflinks 5.509        
cufflinks 11.749     High  
cufflinks 4.592        
cufflinks 0.123     Low Low
cufflinks 4.975        
cufflinks 8.447        
cufflinks 5.773        
cufflinks 4.341        
cufflinks 6.112        
cufflinks 9.024        
cufflinks 0.022     Low Low
cufflinks 7.978        
cufflinks 7.384        
cufflinks 10.215        

0 Strain