Gene : Bradi2g05430 B. distachyon v3.1
Defline:  (1 of 2) K09272 - structure-specific recognition protein 1 (SSRP1) Genomic Order:  704
Name:  ? Bradi2g05430 Secondary Identifier:  ? PAC:32782272
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g05430 0.5kb upstream 0.5kb upstream 6624 true Bd2: 3928033-3934656 Brachypodium distachyon
Bradi2g05430 0.5kb upstream 0.5kb upstream 500 false Bd2: 3928033-3928532 Brachypodium distachyon
Bradi2g05430 0.5kb downstream 0.5kb downstream 6624 true Bd2: 3928533-3935156 Brachypodium distachyon
Bradi2g05430 0.5kb downstream 0.5kb downstream 500 false Bd2: 3934657-3935156 Brachypodium distachyon
Bradi2g05430 1.0kb upstream 1.0kb upstream 7124 true Bd2: 3927533-3934656 Brachypodium distachyon
Bradi2g05430 1.0kb upstream 1.0kb upstream 1000 false Bd2: 3927533-3928532 Brachypodium distachyon
Bradi2g05430 1.0kb downstream 1.0kb downstream 7124 true Bd2: 3928533-3935656 Brachypodium distachyon
Bradi2g05430 1.0kb downstream 1.0kb downstream 1000 false Bd2: 3934657-3935656 Brachypodium distachyon
Bradi2g05430 2.0kb upstream 2.0kb upstream 8124 true Bd2: 3926533-3934656 Brachypodium distachyon
Bradi2g05430 2.0kb upstream 2.0kb upstream 2000 false Bd2: 3926533-3928532 Brachypodium distachyon
Bradi2g05430 2.0kb downstream 2.0kb downstream 8124 true Bd2: 3928533-3936656 Brachypodium distachyon
Bradi2g05430 2.0kb downstream 2.0kb downstream 2000 false Bd2: 3934657-3936656 Brachypodium distachyon
Bradi2g05430 5.0kb upstream 5.0kb upstream 11124 true Bd2: 3923533-3934656 Brachypodium distachyon
Bradi2g05430 5.0kb upstream 5.0kb upstream 5000 false Bd2: 3923533-3928532 Brachypodium distachyon
Bradi2g05430 5.0kb downstream 5.0kb downstream 11124 true Bd2: 3928533-3939656 Brachypodium distachyon
Bradi2g05430 5.0kb downstream 5.0kb downstream 5000 false Bd2: 3934657-3939656 Brachypodium distachyon
Bradi2g05430 10.0kb upstream 10.0kb upstream 16124 true Bd2: 3918533-3934656 Brachypodium distachyon
Bradi2g05430 10.0kb upstream 10.0kb upstream 10000 false Bd2: 3918533-3928532 Brachypodium distachyon
Bradi2g05430 10.0kb downstream 10.0kb downstream 16124 true Bd2: 3928533-3944656 Brachypodium distachyon
Bradi2g05430 10.0kb downstream 10.0kb downstream 10000 false Bd2: 3934657-3944656 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586936 5269 Grass View MSA
122041570 5273 Angiosperm View MSA
121347609 5274 Embryophyte View MSA
123424150 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.272        
cufflinks 0.458        
cufflinks 0.479        
cufflinks 0.418        
cufflinks 0.292        
cufflinks 0.298        
cufflinks 0.393        
cufflinks 0.186        
cufflinks 0.276        
cufflinks 0.214        
cufflinks 0.075       Low
cufflinks 0.32        
cufflinks 0.096       Low
cufflinks 0.067       Low
cufflinks 0.119       Low
cufflinks 0.382        
cufflinks 0.471        
cufflinks 0.49        
cufflinks 0.414        
cufflinks 0.124     Low Low
cufflinks 0.58        
cufflinks 0.387        
cufflinks 0.235        
cufflinks 0.242        
cufflinks 0.374        
cufflinks 0.47        
cufflinks 0.098       Low
cufflinks 0.35        
cufflinks 0.417        
cufflinks 0.805       High

0 Strain