Gene : Bradi5g04080 B. distachyon v3.1
Defline:  (1 of 4) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Genomic Order:  501
Name:  ? Bradi5g04080 Secondary Identifier:  ? PAC:32807640
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CALVIN-PWY Brachypodium distachyon pathologic  
Bdistachyon PHOTOALL-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-5723 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g04080 0.5kb upstream 0.5kb upstream 1875 true Bd5: 5305018-5306892 Brachypodium distachyon
Bradi5g04080 0.5kb upstream 0.5kb upstream 500 false Bd5: 5305018-5305517 Brachypodium distachyon
Bradi5g04080 0.5kb downstream 0.5kb downstream 1875 true Bd5: 5305518-5307392 Brachypodium distachyon
Bradi5g04080 0.5kb downstream 0.5kb downstream 500 false Bd5: 5306893-5307392 Brachypodium distachyon
Bradi5g04080 1.0kb upstream 1.0kb upstream 2375 true Bd5: 5304518-5306892 Brachypodium distachyon
Bradi5g04080 1.0kb upstream 1.0kb upstream 1000 false Bd5: 5304518-5305517 Brachypodium distachyon
Bradi5g04080 1.0kb downstream 1.0kb downstream 2375 true Bd5: 5305518-5307892 Brachypodium distachyon
Bradi5g04080 1.0kb downstream 1.0kb downstream 1000 false Bd5: 5306893-5307892 Brachypodium distachyon
Bradi5g04080 2.0kb upstream 2.0kb upstream 3375 true Bd5: 5303518-5306892 Brachypodium distachyon
Bradi5g04080 2.0kb upstream 2.0kb upstream 2000 false Bd5: 5303518-5305517 Brachypodium distachyon
Bradi5g04080 2.0kb downstream 2.0kb downstream 3375 true Bd5: 5305518-5308892 Brachypodium distachyon
Bradi5g04080 2.0kb downstream 2.0kb downstream 2000 false Bd5: 5306893-5308892 Brachypodium distachyon
Bradi5g04080 5.0kb upstream 5.0kb upstream 6375 true Bd5: 5300518-5306892 Brachypodium distachyon
Bradi5g04080 5.0kb upstream 5.0kb upstream 5000 false Bd5: 5300518-5305517 Brachypodium distachyon
Bradi5g04080 5.0kb downstream 5.0kb downstream 6375 true Bd5: 5305518-5311892 Brachypodium distachyon
Bradi5g04080 5.0kb downstream 5.0kb downstream 5000 false Bd5: 5306893-5311892 Brachypodium distachyon
Bradi5g04080 10.0kb upstream 10.0kb upstream 11375 true Bd5: 5295518-5306892 Brachypodium distachyon
Bradi5g04080 10.0kb upstream 10.0kb upstream 10000 false Bd5: 5295518-5305517 Brachypodium distachyon
Bradi5g04080 10.0kb downstream 10.0kb downstream 11375 true Bd5: 5305518-5316892 Brachypodium distachyon
Bradi5g04080 10.0kb downstream 10.0kb downstream 10000 false Bd5: 5306893-5316892 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124590513 5269 Grass View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 68.13     High  
cufflinks 51.448     High  
cufflinks 105.412     High  
cufflinks 85.122     High  
cufflinks 121.59     High  
cufflinks 104.864     High  
cufflinks 68.672     High  
cufflinks 116.653     High  
cufflinks 128.664     High  
cufflinks 198.281     High  
cufflinks 34.891     High  
cufflinks 94.596     High  
cufflinks 72.314     High  
cufflinks 86.251     High  
cufflinks 101.621     High  
cufflinks 130.022     High  
cufflinks 136.956     High  
cufflinks 0.109     Low Low
cufflinks 45.958     High  
cufflinks 58.418     High  
cufflinks 44.548     High  
cufflinks 160.346     High  
cufflinks 148.718     High  
cufflinks 159.022     High  
cufflinks 118.927     High  
cufflinks 109.992     High  
cufflinks 51.317     High  
cufflinks 178.786     High  
cufflinks 171.482     High  
cufflinks 3.517       Low

0 Strain