Gene : Bradi2g05816 B. distachyon v3.1
Defline:  (1 of 1) 2.1.1.190 - 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Genomic Order:  749
Name:  ? Bradi2g05816 Secondary Identifier:  ? PAC:32780382
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g05816 0.5kb upstream 0.5kb upstream 4589 true Bd2: 4319715-4324303 Brachypodium distachyon
Bradi2g05816 0.5kb upstream 0.5kb upstream 500 false Bd2: 4323804-4324303 Brachypodium distachyon
Bradi2g05816 0.5kb downstream 0.5kb downstream 4589 true Bd2: 4319215-4323803 Brachypodium distachyon
Bradi2g05816 0.5kb downstream 0.5kb downstream 500 false Bd2: 4319215-4319714 Brachypodium distachyon
Bradi2g05816 1.0kb upstream 1.0kb upstream 5089 true Bd2: 4319715-4324803 Brachypodium distachyon
Bradi2g05816 1.0kb upstream 1.0kb upstream 1000 false Bd2: 4323804-4324803 Brachypodium distachyon
Bradi2g05816 1.0kb downstream 1.0kb downstream 5089 true Bd2: 4318715-4323803 Brachypodium distachyon
Bradi2g05816 1.0kb downstream 1.0kb downstream 1000 false Bd2: 4318715-4319714 Brachypodium distachyon
Bradi2g05816 2.0kb upstream 2.0kb upstream 6089 true Bd2: 4319715-4325803 Brachypodium distachyon
Bradi2g05816 2.0kb upstream 2.0kb upstream 2000 false Bd2: 4323804-4325803 Brachypodium distachyon
Bradi2g05816 2.0kb downstream 2.0kb downstream 6089 true Bd2: 4317715-4323803 Brachypodium distachyon
Bradi2g05816 2.0kb downstream 2.0kb downstream 2000 false Bd2: 4317715-4319714 Brachypodium distachyon
Bradi2g05816 5.0kb upstream 5.0kb upstream 9089 true Bd2: 4319715-4328803 Brachypodium distachyon
Bradi2g05816 5.0kb upstream 5.0kb upstream 5000 false Bd2: 4323804-4328803 Brachypodium distachyon
Bradi2g05816 5.0kb downstream 5.0kb downstream 9089 true Bd2: 4314715-4323803 Brachypodium distachyon
Bradi2g05816 5.0kb downstream 5.0kb downstream 5000 false Bd2: 4314715-4319714 Brachypodium distachyon
Bradi2g05816 10.0kb upstream 10.0kb upstream 14089 true Bd2: 4319715-4333803 Brachypodium distachyon
Bradi2g05816 10.0kb upstream 10.0kb upstream 10000 false Bd2: 4323804-4333803 Brachypodium distachyon
Bradi2g05816 10.0kb downstream 10.0kb downstream 14089 true Bd2: 4309715-4323803 Brachypodium distachyon
Bradi2g05816 10.0kb downstream 10.0kb downstream 10000 false Bd2: 4309715-4319714 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574182 5269 Grass View MSA
122042152 5273 Angiosperm View MSA
121345091 5274 Embryophyte View MSA
123424748 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.201     High  
cufflinks 18.166     High High
cufflinks 17.269     High  
cufflinks 18.656     High High
cufflinks 5.554        
cufflinks 11.372     High  
cufflinks 13.534     High  
cufflinks 11.112     High  
cufflinks 10.344     High  
cufflinks 8.742        
cufflinks 11.18     High  
cufflinks 10.879     High  
cufflinks 7.837     High  
cufflinks 10.459     High  
cufflinks 9.176     High  
cufflinks 13.046     High  
cufflinks 8.365        
cufflinks 3.987       Low
cufflinks 9.091        
cufflinks 1.674       Low
cufflinks 8.077        
cufflinks 11.4     High  
cufflinks 10.917     High  
cufflinks 10.753     High  
cufflinks 11.374     High  
cufflinks 16.98     High  
cufflinks 8.402        
cufflinks 14.747     High  
cufflinks 13.002     High  
cufflinks 10.401        

0 Strain