Gene : Bradi2g12100 B. distachyon v3.1
Defline:  (1 of 1) PTHR13495 - NEFA-INTERACTING NUCLEAR PROTEIN NIP30 Genomic Order:  1569
Name:  ? Bradi2g12100 Secondary Identifier:  ? PAC:32771103
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g12100 0.5kb upstream 0.5kb upstream 4600 true Bd2: 10454753-10459352 Brachypodium distachyon
Bradi2g12100 0.5kb upstream 0.5kb upstream 500 false Bd2: 10454753-10455252 Brachypodium distachyon
Bradi2g12100 0.5kb downstream 0.5kb downstream 4600 true Bd2: 10455253-10459852 Brachypodium distachyon
Bradi2g12100 0.5kb downstream 0.5kb downstream 500 false Bd2: 10459353-10459852 Brachypodium distachyon
Bradi2g12100 1.0kb upstream 1.0kb upstream 5100 true Bd2: 10454253-10459352 Brachypodium distachyon
Bradi2g12100 1.0kb upstream 1.0kb upstream 1000 false Bd2: 10454253-10455252 Brachypodium distachyon
Bradi2g12100 1.0kb downstream 1.0kb downstream 5100 true Bd2: 10455253-10460352 Brachypodium distachyon
Bradi2g12100 1.0kb downstream 1.0kb downstream 1000 false Bd2: 10459353-10460352 Brachypodium distachyon
Bradi2g12100 2.0kb upstream 2.0kb upstream 6100 true Bd2: 10453253-10459352 Brachypodium distachyon
Bradi2g12100 2.0kb upstream 2.0kb upstream 2000 false Bd2: 10453253-10455252 Brachypodium distachyon
Bradi2g12100 2.0kb downstream 2.0kb downstream 6100 true Bd2: 10455253-10461352 Brachypodium distachyon
Bradi2g12100 2.0kb downstream 2.0kb downstream 2000 false Bd2: 10459353-10461352 Brachypodium distachyon
Bradi2g12100 5.0kb upstream 5.0kb upstream 9100 true Bd2: 10450253-10459352 Brachypodium distachyon
Bradi2g12100 5.0kb upstream 5.0kb upstream 5000 false Bd2: 10450253-10455252 Brachypodium distachyon
Bradi2g12100 5.0kb downstream 5.0kb downstream 9100 true Bd2: 10455253-10464352 Brachypodium distachyon
Bradi2g12100 5.0kb downstream 5.0kb downstream 5000 false Bd2: 10459353-10464352 Brachypodium distachyon
Bradi2g12100 10.0kb upstream 10.0kb upstream 14100 true Bd2: 10445253-10459352 Brachypodium distachyon
Bradi2g12100 10.0kb upstream 10.0kb upstream 10000 false Bd2: 10445253-10455252 Brachypodium distachyon
Bradi2g12100 10.0kb downstream 10.0kb downstream 14100 true Bd2: 10455253-10469352 Brachypodium distachyon
Bradi2g12100 10.0kb downstream 10.0kb downstream 10000 false Bd2: 10459353-10469352 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569896 5269 Grass View MSA
122047119 5273 Angiosperm View MSA
121346332 5274 Embryophyte View MSA
123425229 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.501        
cufflinks 3.685        
cufflinks 4.047        
cufflinks 2.913       Low
cufflinks 3.397        
cufflinks 3.173        
cufflinks 3.933        
cufflinks 3.272        
cufflinks 3.257        
cufflinks 5.031       High
cufflinks 3.924        
cufflinks 3.04       Low
cufflinks 3.584        
cufflinks 3.706        
cufflinks 3.035       Low
cufflinks 3.896        
cufflinks 4.879        
cufflinks 4.666        
cufflinks 6.493       High
cufflinks 5.338       High
cufflinks 4.863        
cufflinks 4.192        
cufflinks 3.231        
cufflinks 3.17        
cufflinks 3.419        
cufflinks 4.328        
cufflinks 4.24        
cufflinks 5.013       High
cufflinks 4.874        
cufflinks 3.648        

0 Strain