Gene : Bradi2g12300 B. distachyon v3.1
Defline:  (1 of 1) PTHR33824:SF3 - POLYKETIDE CYCLASE / DEHYDRASE AND LIPID TRANSPORT PROTEIN-RELATED Genomic Order:  1593
Name:  ? Bradi2g12300 Secondary Identifier:  ? PAC:32781635
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g12300 0.5kb upstream 0.5kb upstream 3292 true Bd2: 10643962-10647253 Brachypodium distachyon
Bradi2g12300 0.5kb upstream 0.5kb upstream 500 false Bd2: 10643962-10644461 Brachypodium distachyon
Bradi2g12300 0.5kb downstream 0.5kb downstream 3292 true Bd2: 10644462-10647753 Brachypodium distachyon
Bradi2g12300 0.5kb downstream 0.5kb downstream 500 false Bd2: 10647254-10647753 Brachypodium distachyon
Bradi2g12300 1.0kb upstream 1.0kb upstream 3792 true Bd2: 10643462-10647253 Brachypodium distachyon
Bradi2g12300 1.0kb upstream 1.0kb upstream 1000 false Bd2: 10643462-10644461 Brachypodium distachyon
Bradi2g12300 1.0kb downstream 1.0kb downstream 3792 true Bd2: 10644462-10648253 Brachypodium distachyon
Bradi2g12300 1.0kb downstream 1.0kb downstream 1000 false Bd2: 10647254-10648253 Brachypodium distachyon
Bradi2g12300 2.0kb upstream 2.0kb upstream 4792 true Bd2: 10642462-10647253 Brachypodium distachyon
Bradi2g12300 2.0kb upstream 2.0kb upstream 2000 false Bd2: 10642462-10644461 Brachypodium distachyon
Bradi2g12300 2.0kb downstream 2.0kb downstream 4792 true Bd2: 10644462-10649253 Brachypodium distachyon
Bradi2g12300 2.0kb downstream 2.0kb downstream 2000 false Bd2: 10647254-10649253 Brachypodium distachyon
Bradi2g12300 5.0kb upstream 5.0kb upstream 7792 true Bd2: 10639462-10647253 Brachypodium distachyon
Bradi2g12300 5.0kb upstream 5.0kb upstream 5000 false Bd2: 10639462-10644461 Brachypodium distachyon
Bradi2g12300 5.0kb downstream 5.0kb downstream 7792 true Bd2: 10644462-10652253 Brachypodium distachyon
Bradi2g12300 5.0kb downstream 5.0kb downstream 5000 false Bd2: 10647254-10652253 Brachypodium distachyon
Bradi2g12300 10.0kb upstream 10.0kb upstream 12792 true Bd2: 10634462-10647253 Brachypodium distachyon
Bradi2g12300 10.0kb upstream 10.0kb upstream 10000 false Bd2: 10634462-10644461 Brachypodium distachyon
Bradi2g12300 10.0kb downstream 10.0kb downstream 12792 true Bd2: 10644462-10657253 Brachypodium distachyon
Bradi2g12300 10.0kb downstream 10.0kb downstream 10000 false Bd2: 10647254-10657253 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578561 5269 Grass View MSA
122046905 5273 Angiosperm View MSA
121345017 5274 Embryophyte View MSA
123427878 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.331     High High
cufflinks 10.1        
cufflinks 11.01     High  
cufflinks 19.109     High  
cufflinks 29.511     High  
cufflinks 15.73     High  
cufflinks 11.404     High  
cufflinks 33.288     High  
cufflinks 25.845     High  
cufflinks 37.767     High  
cufflinks 22.04     High  
cufflinks 22.693     High  
cufflinks 29.426     High  
cufflinks 36.278     High  
cufflinks 54.877     High High
cufflinks 14.646     High  
cufflinks 39.941     High  
cufflinks 2.125       Low
cufflinks 8.266       Low
cufflinks 18.512     High  
cufflinks 13.135     High  
cufflinks 20.157     High  
cufflinks 36.573     High  
cufflinks 29.391     High  
cufflinks 21.174     High  
cufflinks 17.151     High  
cufflinks 31.765     High  
cufflinks 19.65     High  
cufflinks 24.241     High  
cufflinks 11.524     High  

0 Strain