Gene : Bradi5g01720 B. distachyon v3.1
Defline:  (1 of 1) PTHR10657//PTHR10657:SF4 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE // PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 Genomic Order:  166
Name:  ? Bradi5g01720 Secondary Identifier:  ? PAC:32808240
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g01720 0.5kb upstream 0.5kb upstream 3121 true Bd5: 1752181-1755301 Brachypodium distachyon
Bradi5g01720 0.5kb upstream 0.5kb upstream 500 false Bd5: 1752181-1752680 Brachypodium distachyon
Bradi5g01720 0.5kb downstream 0.5kb downstream 3121 true Bd5: 1752681-1755801 Brachypodium distachyon
Bradi5g01720 0.5kb downstream 0.5kb downstream 500 false Bd5: 1755302-1755801 Brachypodium distachyon
Bradi5g01720 1.0kb upstream 1.0kb upstream 3621 true Bd5: 1751681-1755301 Brachypodium distachyon
Bradi5g01720 1.0kb upstream 1.0kb upstream 1000 false Bd5: 1751681-1752680 Brachypodium distachyon
Bradi5g01720 1.0kb downstream 1.0kb downstream 3621 true Bd5: 1752681-1756301 Brachypodium distachyon
Bradi5g01720 1.0kb downstream 1.0kb downstream 1000 false Bd5: 1755302-1756301 Brachypodium distachyon
Bradi5g01720 2.0kb upstream 2.0kb upstream 4621 true Bd5: 1750681-1755301 Brachypodium distachyon
Bradi5g01720 2.0kb upstream 2.0kb upstream 2000 false Bd5: 1750681-1752680 Brachypodium distachyon
Bradi5g01720 2.0kb downstream 2.0kb downstream 4621 true Bd5: 1752681-1757301 Brachypodium distachyon
Bradi5g01720 2.0kb downstream 2.0kb downstream 2000 false Bd5: 1755302-1757301 Brachypodium distachyon
Bradi5g01720 5.0kb upstream 5.0kb upstream 7621 true Bd5: 1747681-1755301 Brachypodium distachyon
Bradi5g01720 5.0kb upstream 5.0kb upstream 5000 false Bd5: 1747681-1752680 Brachypodium distachyon
Bradi5g01720 5.0kb downstream 5.0kb downstream 7621 true Bd5: 1752681-1760301 Brachypodium distachyon
Bradi5g01720 5.0kb downstream 5.0kb downstream 5000 false Bd5: 1755302-1760301 Brachypodium distachyon
Bradi5g01720 10.0kb upstream 10.0kb upstream 12621 true Bd5: 1742681-1755301 Brachypodium distachyon
Bradi5g01720 10.0kb upstream 10.0kb upstream 10000 false Bd5: 1742681-1752680 Brachypodium distachyon
Bradi5g01720 10.0kb downstream 10.0kb downstream 12621 true Bd5: 1752681-1765301 Brachypodium distachyon
Bradi5g01720 10.0kb downstream 10.0kb downstream 10000 false Bd5: 1755302-1765301 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581463 5269 Grass View MSA
122046490 5273 Angiosperm View MSA
123429014 5275 Viridiplantae View MSA
121345205 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.93        
cufflinks 3.771        
cufflinks 4.088        
cufflinks 4.337        
cufflinks 3.927        
cufflinks 3.29        
cufflinks 4.21        
cufflinks 3.531        
cufflinks 3.621        
cufflinks 9.563       High
cufflinks 2.722       Low
cufflinks 2.241       Low
cufflinks 2.704       Low
cufflinks 2.772       Low
cufflinks 2.794       Low
cufflinks 3.407        
cufflinks 7.142        
cufflinks 5.228        
cufflinks 9.093       High
cufflinks 6.262        
cufflinks 10.433       High
cufflinks 3.733        
cufflinks 3.938        
cufflinks 4.042        
cufflinks 4.807        
cufflinks 6.273        
cufflinks 3.094        
cufflinks 7.338       High
cufflinks 5.776        
cufflinks 4.83        

0 Strain