Gene : Bradi2g12560 B. distachyon v3.1
Defline:  (1 of 1) KOG0190//KOG0191 - Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) // Thioredoxin/protein disulfide isomerase Genomic Order:  1628
Name:  ? Bradi2g12560 Secondary Identifier:  ? PAC:32778695
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g12560 0.5kb upstream 0.5kb upstream 4947 true Bd2: 10911341-10916287 Brachypodium distachyon
Bradi2g12560 0.5kb upstream 0.5kb upstream 500 false Bd2: 10911341-10911840 Brachypodium distachyon
Bradi2g12560 0.5kb downstream 0.5kb downstream 4947 true Bd2: 10911841-10916787 Brachypodium distachyon
Bradi2g12560 0.5kb downstream 0.5kb downstream 500 false Bd2: 10916288-10916787 Brachypodium distachyon
Bradi2g12560 1.0kb upstream 1.0kb upstream 5447 true Bd2: 10910841-10916287 Brachypodium distachyon
Bradi2g12560 1.0kb upstream 1.0kb upstream 1000 false Bd2: 10910841-10911840 Brachypodium distachyon
Bradi2g12560 1.0kb downstream 1.0kb downstream 5447 true Bd2: 10911841-10917287 Brachypodium distachyon
Bradi2g12560 1.0kb downstream 1.0kb downstream 1000 false Bd2: 10916288-10917287 Brachypodium distachyon
Bradi2g12560 2.0kb upstream 2.0kb upstream 6447 true Bd2: 10909841-10916287 Brachypodium distachyon
Bradi2g12560 2.0kb upstream 2.0kb upstream 2000 false Bd2: 10909841-10911840 Brachypodium distachyon
Bradi2g12560 2.0kb downstream 2.0kb downstream 6447 true Bd2: 10911841-10918287 Brachypodium distachyon
Bradi2g12560 2.0kb downstream 2.0kb downstream 2000 false Bd2: 10916288-10918287 Brachypodium distachyon
Bradi2g12560 5.0kb upstream 5.0kb upstream 9447 true Bd2: 10906841-10916287 Brachypodium distachyon
Bradi2g12560 5.0kb upstream 5.0kb upstream 5000 false Bd2: 10906841-10911840 Brachypodium distachyon
Bradi2g12560 5.0kb downstream 5.0kb downstream 9447 true Bd2: 10911841-10921287 Brachypodium distachyon
Bradi2g12560 5.0kb downstream 5.0kb downstream 5000 false Bd2: 10916288-10921287 Brachypodium distachyon
Bradi2g12560 10.0kb upstream 10.0kb upstream 14447 true Bd2: 10901841-10916287 Brachypodium distachyon
Bradi2g12560 10.0kb upstream 10.0kb upstream 10000 false Bd2: 10901841-10911840 Brachypodium distachyon
Bradi2g12560 10.0kb downstream 10.0kb downstream 14447 true Bd2: 10911841-10926287 Brachypodium distachyon
Bradi2g12560 10.0kb downstream 10.0kb downstream 10000 false Bd2: 10916288-10926287 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578746 5269 Grass View MSA
122044773 5273 Angiosperm View MSA
121343999 5274 Embryophyte View MSA
123428832 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.657       Low
cufflinks 7.894        
cufflinks 10.137       High
cufflinks 10.482     High High
cufflinks 6.995        
cufflinks 4.58       Low
cufflinks 5.109        
cufflinks 4.774        
cufflinks 4.734       Low
cufflinks 5.503        
cufflinks 5.058        
cufflinks 4.834        
cufflinks 4.137       Low
cufflinks 4.706       Low
cufflinks 7.171        
cufflinks 4.656       Low
cufflinks 5.789        
cufflinks 12.671     High High
cufflinks 9.769        
cufflinks 5.611        
cufflinks 7.562        
cufflinks 6.045        
cufflinks 5.728        
cufflinks 5.055        
cufflinks 4.925        
cufflinks 11.027     High High
cufflinks 5.534        
cufflinks 10.059       High
cufflinks 7.345        
cufflinks 6.531        

0 Strain