Gene : Bradi2g12740 B. distachyon v3.1
Defline:  (1 of 1) PTHR13622//PTHR13622:SF6 - THIAMIN PYROPHOSPHOKINASE // SUBFAMILY NOT NAMED Genomic Order:  1648
Name:  ? Bradi2g12740 Secondary Identifier:  ? PAC:32779062
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6908 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g12740 0.5kb upstream 0.5kb upstream 8576 true Bd2: 11130628-11139203 Brachypodium distachyon
Bradi2g12740 0.5kb upstream 0.5kb upstream 500 false Bd2: 11138704-11139203 Brachypodium distachyon
Bradi2g12740 0.5kb downstream 0.5kb downstream 8576 true Bd2: 11130128-11138703 Brachypodium distachyon
Bradi2g12740 0.5kb downstream 0.5kb downstream 500 false Bd2: 11130128-11130627 Brachypodium distachyon
Bradi2g12740 1.0kb upstream 1.0kb upstream 9076 true Bd2: 11130628-11139703 Brachypodium distachyon
Bradi2g12740 1.0kb upstream 1.0kb upstream 1000 false Bd2: 11138704-11139703 Brachypodium distachyon
Bradi2g12740 1.0kb downstream 1.0kb downstream 9076 true Bd2: 11129628-11138703 Brachypodium distachyon
Bradi2g12740 1.0kb downstream 1.0kb downstream 1000 false Bd2: 11129628-11130627 Brachypodium distachyon
Bradi2g12740 2.0kb upstream 2.0kb upstream 10076 true Bd2: 11130628-11140703 Brachypodium distachyon
Bradi2g12740 2.0kb upstream 2.0kb upstream 2000 false Bd2: 11138704-11140703 Brachypodium distachyon
Bradi2g12740 2.0kb downstream 2.0kb downstream 10076 true Bd2: 11128628-11138703 Brachypodium distachyon
Bradi2g12740 2.0kb downstream 2.0kb downstream 2000 false Bd2: 11128628-11130627 Brachypodium distachyon
Bradi2g12740 5.0kb upstream 5.0kb upstream 13076 true Bd2: 11130628-11143703 Brachypodium distachyon
Bradi2g12740 5.0kb upstream 5.0kb upstream 5000 false Bd2: 11138704-11143703 Brachypodium distachyon
Bradi2g12740 5.0kb downstream 5.0kb downstream 13076 true Bd2: 11125628-11138703 Brachypodium distachyon
Bradi2g12740 5.0kb downstream 5.0kb downstream 5000 false Bd2: 11125628-11130627 Brachypodium distachyon
Bradi2g12740 10.0kb upstream 10.0kb upstream 18076 true Bd2: 11130628-11148703 Brachypodium distachyon
Bradi2g12740 10.0kb upstream 10.0kb upstream 10000 false Bd2: 11138704-11148703 Brachypodium distachyon
Bradi2g12740 10.0kb downstream 10.0kb downstream 18076 true Bd2: 11120628-11138703 Brachypodium distachyon
Bradi2g12740 10.0kb downstream 10.0kb downstream 10000 false Bd2: 11120628-11130627 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124575442 5269 Grass View MSA
122046316 5273 Angiosperm View MSA
121345006 5274 Embryophyte View MSA
123424730 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.066     Low  
cufflinks 0.048     Low  
cufflinks 0.068     Low  
cufflinks 0.066     Low  
cufflinks 0.073     Low  
cufflinks 0.062     Low  
cufflinks 0.053     Low  
cufflinks 0.088        
cufflinks 0.085     Low  
cufflinks 0.091     Low  
cufflinks 0.017     Low Low
cufflinks 0.076     Low  
cufflinks 0.02     Low Low
cufflinks 0.015     Low Low
cufflinks 0.039     Low  
cufflinks 0.059     Low  
cufflinks 0.09     Low  
cufflinks 0.115     Low  
cufflinks 0.096     Low  
cufflinks 0.014     Low Low
cufflinks 0.155       High
cufflinks 0.109     Low  
cufflinks 0.116        
cufflinks 0.085     Low  
cufflinks 0.069     Low  
cufflinks 0.063     Low  
cufflinks 0.011     Low Low
cufflinks 0.07     Low  
cufflinks 0.088     Low  
cufflinks 0.131       High

0 Strain