Gene : Bradi5g01420 B. distachyon v3.1
Defline:  (1 of 1) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  145
Name:  ? Bradi5g01420 Secondary Identifier:  ? PAC:32808802
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5173 Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon PYRUVDEHYD-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g01420 0.5kb upstream 0.5kb upstream 4473 true Bd5: 1385730-1390202 Brachypodium distachyon
Bradi5g01420 0.5kb upstream 0.5kb upstream 500 false Bd5: 1389703-1390202 Brachypodium distachyon
Bradi5g01420 0.5kb downstream 0.5kb downstream 4473 true Bd5: 1385230-1389702 Brachypodium distachyon
Bradi5g01420 0.5kb downstream 0.5kb downstream 500 false Bd5: 1385230-1385729 Brachypodium distachyon
Bradi5g01420 1.0kb upstream 1.0kb upstream 4973 true Bd5: 1385730-1390702 Brachypodium distachyon
Bradi5g01420 1.0kb upstream 1.0kb upstream 1000 false Bd5: 1389703-1390702 Brachypodium distachyon
Bradi5g01420 1.0kb downstream 1.0kb downstream 4973 true Bd5: 1384730-1389702 Brachypodium distachyon
Bradi5g01420 1.0kb downstream 1.0kb downstream 1000 false Bd5: 1384730-1385729 Brachypodium distachyon
Bradi5g01420 2.0kb upstream 2.0kb upstream 5973 true Bd5: 1385730-1391702 Brachypodium distachyon
Bradi5g01420 2.0kb upstream 2.0kb upstream 2000 false Bd5: 1389703-1391702 Brachypodium distachyon
Bradi5g01420 2.0kb downstream 2.0kb downstream 5973 true Bd5: 1383730-1389702 Brachypodium distachyon
Bradi5g01420 2.0kb downstream 2.0kb downstream 2000 false Bd5: 1383730-1385729 Brachypodium distachyon
Bradi5g01420 5.0kb upstream 5.0kb upstream 8973 true Bd5: 1385730-1394702 Brachypodium distachyon
Bradi5g01420 5.0kb upstream 5.0kb upstream 5000 false Bd5: 1389703-1394702 Brachypodium distachyon
Bradi5g01420 5.0kb downstream 5.0kb downstream 8973 true Bd5: 1380730-1389702 Brachypodium distachyon
Bradi5g01420 5.0kb downstream 5.0kb downstream 5000 false Bd5: 1380730-1385729 Brachypodium distachyon
Bradi5g01420 10.0kb upstream 10.0kb upstream 13973 true Bd5: 1385730-1399702 Brachypodium distachyon
Bradi5g01420 10.0kb upstream 10.0kb upstream 10000 false Bd5: 1389703-1399702 Brachypodium distachyon
Bradi5g01420 10.0kb downstream 10.0kb downstream 13973 true Bd5: 1375730-1389702 Brachypodium distachyon
Bradi5g01420 10.0kb downstream 10.0kb downstream 10000 false Bd5: 1375730-1385729 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579734 5269 Grass View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.111     High  
cufflinks 29.509     High  
cufflinks 35.968     High High
cufflinks 22.554     High  
cufflinks 25.998     High  
cufflinks 31.822     High  
cufflinks 30.909     High  
cufflinks 35.41     High High
cufflinks 29.247     High  
cufflinks 40.327     High High
cufflinks 18.292     High Low
cufflinks 36.695     High High
cufflinks 34.36     High High
cufflinks 21.388     High  
cufflinks 24.341     High  
cufflinks 34.77     High High
cufflinks 29.675     High  
cufflinks 23.776     High  
cufflinks 29.822     High  
cufflinks 12.218     High Low
cufflinks 23.159     High  
cufflinks 44.753     High High
cufflinks 29.731     High  
cufflinks 26.208     High  
cufflinks 25.725     High  
cufflinks 35.36     High High
cufflinks 21.669     High  
cufflinks 37.37     High High
cufflinks 41.567     High High
cufflinks 31.306     High  

0 Strain