Gene : Bradi2g13170 B. distachyon v3.1
Defline:  (1 of 1) PTHR21089//PTHR21089:SF11 - SHIKIMATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  1720
Name:  ? Bradi2g13170 Secondary Identifier:  ? PAC:32779874
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ARO-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6163 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g13170 0.5kb upstream 0.5kb upstream 12090 true Bd2: 11609871-11621960 Brachypodium distachyon
Bradi2g13170 0.5kb upstream 0.5kb upstream 500 false Bd2: 11609871-11610370 Brachypodium distachyon
Bradi2g13170 0.5kb downstream 0.5kb downstream 12090 true Bd2: 11610371-11622460 Brachypodium distachyon
Bradi2g13170 0.5kb downstream 0.5kb downstream 500 false Bd2: 11621961-11622460 Brachypodium distachyon
Bradi2g13170 1.0kb upstream 1.0kb upstream 12590 true Bd2: 11609371-11621960 Brachypodium distachyon
Bradi2g13170 1.0kb upstream 1.0kb upstream 1000 false Bd2: 11609371-11610370 Brachypodium distachyon
Bradi2g13170 1.0kb downstream 1.0kb downstream 12590 true Bd2: 11610371-11622960 Brachypodium distachyon
Bradi2g13170 1.0kb downstream 1.0kb downstream 1000 false Bd2: 11621961-11622960 Brachypodium distachyon
Bradi2g13170 2.0kb upstream 2.0kb upstream 13590 true Bd2: 11608371-11621960 Brachypodium distachyon
Bradi2g13170 2.0kb upstream 2.0kb upstream 2000 false Bd2: 11608371-11610370 Brachypodium distachyon
Bradi2g13170 2.0kb downstream 2.0kb downstream 13590 true Bd2: 11610371-11623960 Brachypodium distachyon
Bradi2g13170 2.0kb downstream 2.0kb downstream 2000 false Bd2: 11621961-11623960 Brachypodium distachyon
Bradi2g13170 5.0kb upstream 5.0kb upstream 16590 true Bd2: 11605371-11621960 Brachypodium distachyon
Bradi2g13170 5.0kb upstream 5.0kb upstream 5000 false Bd2: 11605371-11610370 Brachypodium distachyon
Bradi2g13170 5.0kb downstream 5.0kb downstream 16590 true Bd2: 11610371-11626960 Brachypodium distachyon
Bradi2g13170 5.0kb downstream 5.0kb downstream 5000 false Bd2: 11621961-11626960 Brachypodium distachyon
Bradi2g13170 10.0kb upstream 10.0kb upstream 21590 true Bd2: 11600371-11621960 Brachypodium distachyon
Bradi2g13170 10.0kb upstream 10.0kb upstream 10000 false Bd2: 11600371-11610370 Brachypodium distachyon
Bradi2g13170 10.0kb downstream 10.0kb downstream 21590 true Bd2: 11610371-11631960 Brachypodium distachyon
Bradi2g13170 10.0kb downstream 10.0kb downstream 10000 false Bd2: 11621961-11631960 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570353 5269 Grass View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.53       High
cufflinks 0.94        
cufflinks 1.05        
cufflinks 1.077        
cufflinks 0.778        
cufflinks 1.001        
cufflinks 0.82        
cufflinks 0.922        
cufflinks 0.931        
cufflinks 0.773        
cufflinks 0.462       Low
cufflinks 1.054        
cufflinks 0.404       Low
cufflinks 0.332       Low
cufflinks 1.277        
cufflinks 1.006        
cufflinks 1.022        
cufflinks 2.731       High
cufflinks 1.292        
cufflinks 0.326       Low
cufflinks 1.722       High
cufflinks 0.964        
cufflinks 0.936        
cufflinks 0.965        
cufflinks 0.98        
cufflinks 0.944        
cufflinks 0.434       Low
cufflinks 0.855        
cufflinks 0.862        
cufflinks 1.735       High

0 Strain