Gene : Bradi2g13480 B. distachyon v3.1
Defline:  (1 of 58) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1756
Name:  ? Bradi2g13480 Secondary Identifier:  ? PAC:32780385
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g13480 0.5kb upstream 0.5kb upstream 2612 true Bd2: 11972559-11975170 Brachypodium distachyon
Bradi2g13480 0.5kb upstream 0.5kb upstream 500 false Bd2: 11974671-11975170 Brachypodium distachyon
Bradi2g13480 0.5kb downstream 0.5kb downstream 2612 true Bd2: 11972059-11974670 Brachypodium distachyon
Bradi2g13480 0.5kb downstream 0.5kb downstream 500 false Bd2: 11972059-11972558 Brachypodium distachyon
Bradi2g13480 1.0kb upstream 1.0kb upstream 3112 true Bd2: 11972559-11975670 Brachypodium distachyon
Bradi2g13480 1.0kb upstream 1.0kb upstream 1000 false Bd2: 11974671-11975670 Brachypodium distachyon
Bradi2g13480 1.0kb downstream 1.0kb downstream 3112 true Bd2: 11971559-11974670 Brachypodium distachyon
Bradi2g13480 1.0kb downstream 1.0kb downstream 1000 false Bd2: 11971559-11972558 Brachypodium distachyon
Bradi2g13480 2.0kb upstream 2.0kb upstream 4112 true Bd2: 11972559-11976670 Brachypodium distachyon
Bradi2g13480 2.0kb upstream 2.0kb upstream 2000 false Bd2: 11974671-11976670 Brachypodium distachyon
Bradi2g13480 2.0kb downstream 2.0kb downstream 4112 true Bd2: 11970559-11974670 Brachypodium distachyon
Bradi2g13480 2.0kb downstream 2.0kb downstream 2000 false Bd2: 11970559-11972558 Brachypodium distachyon
Bradi2g13480 5.0kb upstream 5.0kb upstream 7112 true Bd2: 11972559-11979670 Brachypodium distachyon
Bradi2g13480 5.0kb upstream 5.0kb upstream 5000 false Bd2: 11974671-11979670 Brachypodium distachyon
Bradi2g13480 5.0kb downstream 5.0kb downstream 7112 true Bd2: 11967559-11974670 Brachypodium distachyon
Bradi2g13480 5.0kb downstream 5.0kb downstream 5000 false Bd2: 11967559-11972558 Brachypodium distachyon
Bradi2g13480 10.0kb upstream 10.0kb upstream 12112 true Bd2: 11972559-11984670 Brachypodium distachyon
Bradi2g13480 10.0kb upstream 10.0kb upstream 10000 false Bd2: 11974671-11984670 Brachypodium distachyon
Bradi2g13480 10.0kb downstream 10.0kb downstream 12112 true Bd2: 11962559-11974670 Brachypodium distachyon
Bradi2g13480 10.0kb downstream 10.0kb downstream 10000 false Bd2: 11962559-11972558 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572729 5269 Grass View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.98        
cufflinks 1.946       High
cufflinks 1.441        
cufflinks 1.451        
cufflinks 0.48        
cufflinks 1.097        
cufflinks 1.385        
cufflinks 0.577        
cufflinks 0.788        
cufflinks 0.521        
cufflinks 0.449        
cufflinks 0.685        
cufflinks 0.289       Low
cufflinks 0.187       Low
cufflinks 0.432        
cufflinks 1.396        
cufflinks 0.913        
cufflinks 2.35       High
cufflinks 0.946        
cufflinks 0.145     Low Low
cufflinks 1.382        
cufflinks 1.015        
cufflinks 0.735        
cufflinks 0.825        
cufflinks 1.247        
cufflinks 1.166        
cufflinks 0.386        
cufflinks 1.236        
cufflinks 1.003        
cufflinks 1.447        

0 Strain