Gene : Bradi2g09850 B. distachyon v3.1
Defline:  (1 of 1) PTHR15316:SF1 - SPLICING FACTOR 3A SUBUNIT 1 Genomic Order:  1265
Name:  ? Bradi2g09850 Secondary Identifier:  ? PAC:32772035
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g09850 0.5kb upstream 0.5kb upstream 3961 true Bd2: 8062684-8066644 Brachypodium distachyon
Bradi2g09850 0.5kb upstream 0.5kb upstream 500 false Bd2: 8062684-8063183 Brachypodium distachyon
Bradi2g09850 0.5kb downstream 0.5kb downstream 3961 true Bd2: 8063184-8067144 Brachypodium distachyon
Bradi2g09850 0.5kb downstream 0.5kb downstream 500 false Bd2: 8066645-8067144 Brachypodium distachyon
Bradi2g09850 1.0kb upstream 1.0kb upstream 4461 true Bd2: 8062184-8066644 Brachypodium distachyon
Bradi2g09850 1.0kb upstream 1.0kb upstream 1000 false Bd2: 8062184-8063183 Brachypodium distachyon
Bradi2g09850 1.0kb downstream 1.0kb downstream 4461 true Bd2: 8063184-8067644 Brachypodium distachyon
Bradi2g09850 1.0kb downstream 1.0kb downstream 1000 false Bd2: 8066645-8067644 Brachypodium distachyon
Bradi2g09850 2.0kb upstream 2.0kb upstream 5461 true Bd2: 8061184-8066644 Brachypodium distachyon
Bradi2g09850 2.0kb upstream 2.0kb upstream 2000 false Bd2: 8061184-8063183 Brachypodium distachyon
Bradi2g09850 2.0kb downstream 2.0kb downstream 5461 true Bd2: 8063184-8068644 Brachypodium distachyon
Bradi2g09850 2.0kb downstream 2.0kb downstream 2000 false Bd2: 8066645-8068644 Brachypodium distachyon
Bradi2g09850 5.0kb upstream 5.0kb upstream 8461 true Bd2: 8058184-8066644 Brachypodium distachyon
Bradi2g09850 5.0kb upstream 5.0kb upstream 5000 false Bd2: 8058184-8063183 Brachypodium distachyon
Bradi2g09850 5.0kb downstream 5.0kb downstream 8461 true Bd2: 8063184-8071644 Brachypodium distachyon
Bradi2g09850 5.0kb downstream 5.0kb downstream 5000 false Bd2: 8066645-8071644 Brachypodium distachyon
Bradi2g09850 10.0kb upstream 10.0kb upstream 13461 true Bd2: 8053184-8066644 Brachypodium distachyon
Bradi2g09850 10.0kb upstream 10.0kb upstream 10000 false Bd2: 8053184-8063183 Brachypodium distachyon
Bradi2g09850 10.0kb downstream 10.0kb downstream 13461 true Bd2: 8063184-8076644 Brachypodium distachyon
Bradi2g09850 10.0kb downstream 10.0kb downstream 10000 false Bd2: 8066645-8076644 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041332 5273 Angiosperm View MSA
124589801 5269 Grass View MSA
121344762 5274 Embryophyte View MSA
123425409 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.57        
cufflinks 7.06        
cufflinks 8.674       High
cufflinks 4.947        
cufflinks 2.955       Low
cufflinks 5.877        
cufflinks 6.793        
cufflinks 5.67        
cufflinks 5.632        
cufflinks 4.987        
cufflinks 5.29        
cufflinks 6.089        
cufflinks 4.187        
cufflinks 4.076        
cufflinks 3.562       Low
cufflinks 7.093        
cufflinks 4.167        
cufflinks 10.806       High
cufflinks 9.894       High
cufflinks 4.581        
cufflinks 6.21        
cufflinks 7.841        
cufflinks 5.363        
cufflinks 4.814        
cufflinks 4.555        
cufflinks 7.259        
cufflinks 5.028        
cufflinks 7.994        
cufflinks 7.722        
cufflinks 8.294        

0 Strain