Gene : Bradi5g01880 B. distachyon v3.1
Defline:  (1 of 1) PTHR17614 - ZINC FINGER-CONTAINING Genomic Order:  188
Name:  ? Bradi5g01880 Secondary Identifier:  ? PAC:32808716
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi5g01880 0.5kb upstream 0.5kb upstream 4168 true Bd5: 1915255-1919422 Brachypodium distachyon
Bradi5g01880 0.5kb upstream 0.5kb upstream 500 false Bd5: 1918923-1919422 Brachypodium distachyon
Bradi5g01880 0.5kb downstream 0.5kb downstream 4168 true Bd5: 1914755-1918922 Brachypodium distachyon
Bradi5g01880 0.5kb downstream 0.5kb downstream 500 false Bd5: 1914755-1915254 Brachypodium distachyon
Bradi5g01880 1.0kb upstream 1.0kb upstream 4668 true Bd5: 1915255-1919922 Brachypodium distachyon
Bradi5g01880 1.0kb upstream 1.0kb upstream 1000 false Bd5: 1918923-1919922 Brachypodium distachyon
Bradi5g01880 1.0kb downstream 1.0kb downstream 4668 true Bd5: 1914255-1918922 Brachypodium distachyon
Bradi5g01880 1.0kb downstream 1.0kb downstream 1000 false Bd5: 1914255-1915254 Brachypodium distachyon
Bradi5g01880 2.0kb upstream 2.0kb upstream 5668 true Bd5: 1915255-1920922 Brachypodium distachyon
Bradi5g01880 2.0kb upstream 2.0kb upstream 2000 false Bd5: 1918923-1920922 Brachypodium distachyon
Bradi5g01880 2.0kb downstream 2.0kb downstream 5668 true Bd5: 1913255-1918922 Brachypodium distachyon
Bradi5g01880 2.0kb downstream 2.0kb downstream 2000 false Bd5: 1913255-1915254 Brachypodium distachyon
Bradi5g01880 5.0kb upstream 5.0kb upstream 8668 true Bd5: 1915255-1923922 Brachypodium distachyon
Bradi5g01880 5.0kb upstream 5.0kb upstream 5000 false Bd5: 1918923-1923922 Brachypodium distachyon
Bradi5g01880 5.0kb downstream 5.0kb downstream 8668 true Bd5: 1910255-1918922 Brachypodium distachyon
Bradi5g01880 5.0kb downstream 5.0kb downstream 5000 false Bd5: 1910255-1915254 Brachypodium distachyon
Bradi5g01880 10.0kb upstream 10.0kb upstream 13668 true Bd5: 1915255-1928922 Brachypodium distachyon
Bradi5g01880 10.0kb upstream 10.0kb upstream 10000 false Bd5: 1918923-1928922 Brachypodium distachyon
Bradi5g01880 10.0kb downstream 10.0kb downstream 13668 true Bd5: 1905255-1918922 Brachypodium distachyon
Bradi5g01880 10.0kb downstream 10.0kb downstream 10000 false Bd5: 1905255-1915254 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577303 5269 Grass View MSA
122048109 5273 Angiosperm View MSA
121344086 5274 Embryophyte View MSA
123424023 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.773       Low
cufflinks 10.736     High  
cufflinks 11.586     High  
cufflinks 11.715     High  
cufflinks 7.482       Low
cufflinks 10.263     High  
cufflinks 10.295     High  
cufflinks 8.457        
cufflinks 9.786     High  
cufflinks 14.34     High High
cufflinks 10.034     High  
cufflinks 8.486        
cufflinks 7.844     High Low
cufflinks 7.978     High Low
cufflinks 6.237       Low
cufflinks 8.467        
cufflinks 10.872        
cufflinks 11.567     High  
cufflinks 17.693     High High
cufflinks 15.006     High High
cufflinks 11.19     High  
cufflinks 10.917     High  
cufflinks 8.519        
cufflinks 9.252        
cufflinks 10.962     High  
cufflinks 13.787     High High
cufflinks 12.181     High  
cufflinks 14.974     High High
cufflinks 12.262     High  
cufflinks 9.403        

0 Strain