Gene : Bradi2g16500 B. distachyon v3.1
Defline:  (1 of 1) K09494 - T-complex protein 1 subunit beta (CCT2) Genomic Order:  2094
Name:  ? Bradi2g16500 Secondary Identifier:  ? PAC:32772270
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g16500 0.5kb upstream 0.5kb upstream 5059 true Bd2: 14520548-14525606 Brachypodium distachyon
Bradi2g16500 0.5kb upstream 0.5kb upstream 500 false Bd2: 14525107-14525606 Brachypodium distachyon
Bradi2g16500 0.5kb downstream 0.5kb downstream 5059 true Bd2: 14520048-14525106 Brachypodium distachyon
Bradi2g16500 0.5kb downstream 0.5kb downstream 500 false Bd2: 14520048-14520547 Brachypodium distachyon
Bradi2g16500 1.0kb upstream 1.0kb upstream 5559 true Bd2: 14520548-14526106 Brachypodium distachyon
Bradi2g16500 1.0kb upstream 1.0kb upstream 1000 false Bd2: 14525107-14526106 Brachypodium distachyon
Bradi2g16500 1.0kb downstream 1.0kb downstream 5559 true Bd2: 14519548-14525106 Brachypodium distachyon
Bradi2g16500 1.0kb downstream 1.0kb downstream 1000 false Bd2: 14519548-14520547 Brachypodium distachyon
Bradi2g16500 2.0kb upstream 2.0kb upstream 6559 true Bd2: 14520548-14527106 Brachypodium distachyon
Bradi2g16500 2.0kb upstream 2.0kb upstream 2000 false Bd2: 14525107-14527106 Brachypodium distachyon
Bradi2g16500 2.0kb downstream 2.0kb downstream 6559 true Bd2: 14518548-14525106 Brachypodium distachyon
Bradi2g16500 2.0kb downstream 2.0kb downstream 2000 false Bd2: 14518548-14520547 Brachypodium distachyon
Bradi2g16500 5.0kb upstream 5.0kb upstream 9559 true Bd2: 14520548-14530106 Brachypodium distachyon
Bradi2g16500 5.0kb upstream 5.0kb upstream 5000 false Bd2: 14525107-14530106 Brachypodium distachyon
Bradi2g16500 5.0kb downstream 5.0kb downstream 9559 true Bd2: 14515548-14525106 Brachypodium distachyon
Bradi2g16500 5.0kb downstream 5.0kb downstream 5000 false Bd2: 14515548-14520547 Brachypodium distachyon
Bradi2g16500 10.0kb upstream 10.0kb upstream 14559 true Bd2: 14520548-14535106 Brachypodium distachyon
Bradi2g16500 10.0kb upstream 10.0kb upstream 10000 false Bd2: 14525107-14535106 Brachypodium distachyon
Bradi2g16500 10.0kb downstream 10.0kb downstream 14559 true Bd2: 14510548-14525106 Brachypodium distachyon
Bradi2g16500 10.0kb downstream 10.0kb downstream 10000 false Bd2: 14510548-14520547 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124571728 5269 Grass View MSA
122042218 5273 Angiosperm View MSA
121346616 5274 Embryophyte View MSA
123426772 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.875     High  
cufflinks 48.189     High  
cufflinks 47.445     High  
cufflinks 43.852     High  
cufflinks 24.863     High  
cufflinks 43.69     High  
cufflinks 39.917     High  
cufflinks 32.183     High  
cufflinks 40.525     High  
cufflinks 23.99     High  
cufflinks 15.347     High Low
cufflinks 35.04     High  
cufflinks 11.541     High Low
cufflinks 11.799     High Low
cufflinks 23.026     High  
cufflinks 43.306     High  
cufflinks 28.939     High  
cufflinks 74.219     High High
cufflinks 21.859     High  
cufflinks 6.573       Low
cufflinks 35.294     High  
cufflinks 35.342     High  
cufflinks 31.219     High  
cufflinks 33.735     High  
cufflinks 39.599     High  
cufflinks 35.312     High  
cufflinks 14.8     High Low
cufflinks 31.863     High  
cufflinks 32.381     High  
cufflinks 47.395     High  

0 Strain