Gene : Bradi2g16647 B. distachyon v3.1
Defline:  (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) Genomic Order:  2112
Name:  ? Bradi2g16647 Secondary Identifier:  ? PAC:32772064
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g16647 0.5kb upstream 0.5kb upstream 14462 true Bd2: 14621486-14635947 Brachypodium distachyon
Bradi2g16647 0.5kb upstream 0.5kb upstream 500 false Bd2: 14621486-14621985 Brachypodium distachyon
Bradi2g16647 0.5kb downstream 0.5kb downstream 14462 true Bd2: 14621986-14636447 Brachypodium distachyon
Bradi2g16647 0.5kb downstream 0.5kb downstream 500 false Bd2: 14635948-14636447 Brachypodium distachyon
Bradi2g16647 1.0kb upstream 1.0kb upstream 14962 true Bd2: 14620986-14635947 Brachypodium distachyon
Bradi2g16647 1.0kb upstream 1.0kb upstream 1000 false Bd2: 14620986-14621985 Brachypodium distachyon
Bradi2g16647 1.0kb downstream 1.0kb downstream 14962 true Bd2: 14621986-14636947 Brachypodium distachyon
Bradi2g16647 1.0kb downstream 1.0kb downstream 1000 false Bd2: 14635948-14636947 Brachypodium distachyon
Bradi2g16647 2.0kb upstream 2.0kb upstream 15962 true Bd2: 14619986-14635947 Brachypodium distachyon
Bradi2g16647 2.0kb upstream 2.0kb upstream 2000 false Bd2: 14619986-14621985 Brachypodium distachyon
Bradi2g16647 2.0kb downstream 2.0kb downstream 15962 true Bd2: 14621986-14637947 Brachypodium distachyon
Bradi2g16647 2.0kb downstream 2.0kb downstream 2000 false Bd2: 14635948-14637947 Brachypodium distachyon
Bradi2g16647 5.0kb upstream 5.0kb upstream 18962 true Bd2: 14616986-14635947 Brachypodium distachyon
Bradi2g16647 5.0kb upstream 5.0kb upstream 5000 false Bd2: 14616986-14621985 Brachypodium distachyon
Bradi2g16647 5.0kb downstream 5.0kb downstream 18962 true Bd2: 14621986-14640947 Brachypodium distachyon
Bradi2g16647 5.0kb downstream 5.0kb downstream 5000 false Bd2: 14635948-14640947 Brachypodium distachyon
Bradi2g16647 10.0kb upstream 10.0kb upstream 23962 true Bd2: 14611986-14635947 Brachypodium distachyon
Bradi2g16647 10.0kb upstream 10.0kb upstream 10000 false Bd2: 14611986-14621985 Brachypodium distachyon
Bradi2g16647 10.0kb downstream 10.0kb downstream 23962 true Bd2: 14621986-14645947 Brachypodium distachyon
Bradi2g16647 10.0kb downstream 10.0kb downstream 10000 false Bd2: 14635948-14645947 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585412 5269 Grass View MSA
122044576 5273 Angiosperm View MSA
121345296 5274 Embryophyte View MSA
123427491 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.421        
cufflinks 7.595       High
cufflinks 8.744       High
cufflinks 5.831        
cufflinks 1.964       Low
cufflinks 4.851        
cufflinks 4.956        
cufflinks 4.861        
cufflinks 5.389        
cufflinks 4.069        
cufflinks 5.945        
cufflinks 5.724        
cufflinks 5.023        
cufflinks 3.627        
cufflinks 4.359        
cufflinks 4.948        
cufflinks 1.992       Low
cufflinks 6.411        
cufflinks 3.232        
cufflinks 1.83       Low
cufflinks 2.311       Low
cufflinks 9.082       High
cufflinks 5.331        
cufflinks 4.254        
cufflinks 3.569        
cufflinks 7.439       High
cufflinks 6.218        
cufflinks 7.422       High
cufflinks 6.898        
cufflinks 4.912        

0 Strain