Gene : Bradi2g13860 B. distachyon v3.1
Defline:  (1 of 5) PTHR24078:SF261 - DNAJ (HSP40) HOMOLOG, SUBFAMILY A, MEMBER 3A Genomic Order:  1804
Name:  ? Bradi2g13860 Secondary Identifier:  ? PAC:32771592
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g13860 0.5kb upstream 0.5kb upstream 2338 true Bd2: 12543731-12546068 Brachypodium distachyon
Bradi2g13860 0.5kb upstream 0.5kb upstream 500 false Bd2: 12543731-12544230 Brachypodium distachyon
Bradi2g13860 0.5kb downstream 0.5kb downstream 2338 true Bd2: 12544231-12546568 Brachypodium distachyon
Bradi2g13860 0.5kb downstream 0.5kb downstream 500 false Bd2: 12546069-12546568 Brachypodium distachyon
Bradi2g13860 1.0kb upstream 1.0kb upstream 2838 true Bd2: 12543231-12546068 Brachypodium distachyon
Bradi2g13860 1.0kb upstream 1.0kb upstream 1000 false Bd2: 12543231-12544230 Brachypodium distachyon
Bradi2g13860 1.0kb downstream 1.0kb downstream 2838 true Bd2: 12544231-12547068 Brachypodium distachyon
Bradi2g13860 1.0kb downstream 1.0kb downstream 1000 false Bd2: 12546069-12547068 Brachypodium distachyon
Bradi2g13860 2.0kb upstream 2.0kb upstream 3838 true Bd2: 12542231-12546068 Brachypodium distachyon
Bradi2g13860 2.0kb upstream 2.0kb upstream 2000 false Bd2: 12542231-12544230 Brachypodium distachyon
Bradi2g13860 2.0kb downstream 2.0kb downstream 3838 true Bd2: 12544231-12548068 Brachypodium distachyon
Bradi2g13860 2.0kb downstream 2.0kb downstream 2000 false Bd2: 12546069-12548068 Brachypodium distachyon
Bradi2g13860 5.0kb upstream 5.0kb upstream 6838 true Bd2: 12539231-12546068 Brachypodium distachyon
Bradi2g13860 5.0kb upstream 5.0kb upstream 5000 false Bd2: 12539231-12544230 Brachypodium distachyon
Bradi2g13860 5.0kb downstream 5.0kb downstream 6838 true Bd2: 12544231-12551068 Brachypodium distachyon
Bradi2g13860 5.0kb downstream 5.0kb downstream 5000 false Bd2: 12546069-12551068 Brachypodium distachyon
Bradi2g13860 10.0kb upstream 10.0kb upstream 11838 true Bd2: 12534231-12546068 Brachypodium distachyon
Bradi2g13860 10.0kb upstream 10.0kb upstream 10000 false Bd2: 12534231-12544230 Brachypodium distachyon
Bradi2g13860 10.0kb downstream 10.0kb downstream 11838 true Bd2: 12544231-12556068 Brachypodium distachyon
Bradi2g13860 10.0kb downstream 10.0kb downstream 10000 false Bd2: 12546069-12556068 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570180 5269 Grass View MSA
122045009 5273 Angiosperm View MSA
121349410 5274 Embryophyte View MSA
123426863 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.632        
cufflinks 9.088        
cufflinks 10.789     High  
cufflinks 9.28        
cufflinks 4.978       Low
cufflinks 13.388     High  
cufflinks 12.438     High  
cufflinks 9.66     High  
cufflinks 13.365     High  
cufflinks 22.115     High High
cufflinks 16.689     High  
cufflinks 6.048        
cufflinks 18.663     High High
cufflinks 16.801     High  
cufflinks 6.271        
cufflinks 12.702     High  
cufflinks 12.197     High  
cufflinks 3.034       Low
cufflinks 8.527        
cufflinks 10.7        
cufflinks 10.465        
cufflinks 10.059     High  
cufflinks 8.522        
cufflinks 14.029     High  
cufflinks 15.922     High  
cufflinks 13.577     High  
cufflinks 18.838     High High
cufflinks 14.864     High  
cufflinks 14.894     High  
cufflinks 4.944       Low

0 Strain