Gene : Bradi2g15307 B. distachyon v3.1
Defline:  (1 of 1) 2.5.1.30 - Heptaprenyl diphosphate synthase / Trans-hexaprenyltranstransferase Genomic Order:  1948
Name:  ? Bradi2g15307 Secondary Identifier:  ? PAC:32777287
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon HEXPPSYN-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-5120 Brachypodium distachyon pathologic  
Bdistachyon PWY-5783 Brachypodium distachyon pathologic  
Bdistachyon PWY-5805 Brachypodium distachyon pathologic  
Bdistachyon PWY-5807 Brachypodium distachyon pathologic  
Bdistachyon PWY-5910 Brachypodium distachyon pathologic  
Bdistachyon PWY-6520 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g15307 0.5kb upstream 0.5kb upstream 4078 true Bd2: 13671532-13675609 Brachypodium distachyon
Bradi2g15307 0.5kb upstream 0.5kb upstream 500 false Bd2: 13671532-13672031 Brachypodium distachyon
Bradi2g15307 0.5kb downstream 0.5kb downstream 4078 true Bd2: 13672032-13676109 Brachypodium distachyon
Bradi2g15307 0.5kb downstream 0.5kb downstream 500 false Bd2: 13675610-13676109 Brachypodium distachyon
Bradi2g15307 1.0kb upstream 1.0kb upstream 4578 true Bd2: 13671032-13675609 Brachypodium distachyon
Bradi2g15307 1.0kb upstream 1.0kb upstream 1000 false Bd2: 13671032-13672031 Brachypodium distachyon
Bradi2g15307 1.0kb downstream 1.0kb downstream 4578 true Bd2: 13672032-13676609 Brachypodium distachyon
Bradi2g15307 1.0kb downstream 1.0kb downstream 1000 false Bd2: 13675610-13676609 Brachypodium distachyon
Bradi2g15307 2.0kb upstream 2.0kb upstream 5578 true Bd2: 13670032-13675609 Brachypodium distachyon
Bradi2g15307 2.0kb upstream 2.0kb upstream 2000 false Bd2: 13670032-13672031 Brachypodium distachyon
Bradi2g15307 2.0kb downstream 2.0kb downstream 5578 true Bd2: 13672032-13677609 Brachypodium distachyon
Bradi2g15307 2.0kb downstream 2.0kb downstream 2000 false Bd2: 13675610-13677609 Brachypodium distachyon
Bradi2g15307 5.0kb upstream 5.0kb upstream 8578 true Bd2: 13667032-13675609 Brachypodium distachyon
Bradi2g15307 5.0kb upstream 5.0kb upstream 5000 false Bd2: 13667032-13672031 Brachypodium distachyon
Bradi2g15307 5.0kb downstream 5.0kb downstream 8578 true Bd2: 13672032-13680609 Brachypodium distachyon
Bradi2g15307 5.0kb downstream 5.0kb downstream 5000 false Bd2: 13675610-13680609 Brachypodium distachyon
Bradi2g15307 10.0kb upstream 10.0kb upstream 13578 true Bd2: 13662032-13675609 Brachypodium distachyon
Bradi2g15307 10.0kb upstream 10.0kb upstream 10000 false Bd2: 13662032-13672031 Brachypodium distachyon
Bradi2g15307 10.0kb downstream 10.0kb downstream 13578 true Bd2: 13672032-13685609 Brachypodium distachyon
Bradi2g15307 10.0kb downstream 10.0kb downstream 10000 false Bd2: 13675610-13685609 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041065 5273 Angiosperm View MSA
124574898 5269 Grass View MSA
121345449 5274 Embryophyte View MSA
123424009 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 87.119     High High
cufflinks 22.739     High  
cufflinks 16.792     High  
cufflinks 31.493     High  
cufflinks 42.619     High  
cufflinks 24.68     High  
cufflinks 15.617     High  
cufflinks 61.263     High High
cufflinks 31.305     High  
cufflinks 11.977     High  
cufflinks 39.392     High  
cufflinks 31.485     High  
cufflinks 38.378     High  
cufflinks 54.296     High High
cufflinks 138.393     High High
cufflinks 24.077     High  
cufflinks 31.869     High  
cufflinks 5.418       Low
cufflinks 9.631       Low
cufflinks 30.085     High  
cufflinks 10.215       Low
cufflinks 16.623     High  
cufflinks 65.811     High High
cufflinks 40.149     High  
cufflinks 23.728     High  
cufflinks 16.322     High  
cufflinks 66.753     High High
cufflinks 14.384     High  
cufflinks 16.453     High  
cufflinks 8.929       Low

0 Strain