Gene : Bradi2g23200 B. distachyon v3.1
Defline:  (1 of 3) K10703 - very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase (PHS1, PAS2) Genomic Order:  2944
Name:  ? Bradi2g23200 Secondary Identifier:  ? PAC:32770977
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5080 Brachypodium distachyon pathologic  
Bdistachyon PWY-6433 Brachypodium distachyon pathologic  
Bdistachyon PWY-6598 Brachypodium distachyon pathologic  
Bdistachyon PWY-7036 Brachypodium distachyon pathologic  
Bdistachyon PWY-7601 Brachypodium distachyon pathologic  
Bdistachyon PWY-7606 Brachypodium distachyon pathologic  
Bdistachyon PWY-7619 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g23200 0.5kb upstream 0.5kb upstream 2460 true Bd2: 20755429-20757888 Brachypodium distachyon
Bradi2g23200 0.5kb upstream 0.5kb upstream 500 false Bd2: 20755429-20755928 Brachypodium distachyon
Bradi2g23200 0.5kb downstream 0.5kb downstream 2460 true Bd2: 20755929-20758388 Brachypodium distachyon
Bradi2g23200 0.5kb downstream 0.5kb downstream 500 false Bd2: 20757889-20758388 Brachypodium distachyon
Bradi2g23200 1.0kb upstream 1.0kb upstream 2960 true Bd2: 20754929-20757888 Brachypodium distachyon
Bradi2g23200 1.0kb upstream 1.0kb upstream 1000 false Bd2: 20754929-20755928 Brachypodium distachyon
Bradi2g23200 1.0kb downstream 1.0kb downstream 2960 true Bd2: 20755929-20758888 Brachypodium distachyon
Bradi2g23200 1.0kb downstream 1.0kb downstream 1000 false Bd2: 20757889-20758888 Brachypodium distachyon
Bradi2g23200 2.0kb upstream 2.0kb upstream 3960 true Bd2: 20753929-20757888 Brachypodium distachyon
Bradi2g23200 2.0kb upstream 2.0kb upstream 2000 false Bd2: 20753929-20755928 Brachypodium distachyon
Bradi2g23200 2.0kb downstream 2.0kb downstream 3960 true Bd2: 20755929-20759888 Brachypodium distachyon
Bradi2g23200 2.0kb downstream 2.0kb downstream 2000 false Bd2: 20757889-20759888 Brachypodium distachyon
Bradi2g23200 5.0kb upstream 5.0kb upstream 6960 true Bd2: 20750929-20757888 Brachypodium distachyon
Bradi2g23200 5.0kb upstream 5.0kb upstream 5000 false Bd2: 20750929-20755928 Brachypodium distachyon
Bradi2g23200 5.0kb downstream 5.0kb downstream 6960 true Bd2: 20755929-20762888 Brachypodium distachyon
Bradi2g23200 5.0kb downstream 5.0kb downstream 5000 false Bd2: 20757889-20762888 Brachypodium distachyon
Bradi2g23200 10.0kb upstream 10.0kb upstream 11960 true Bd2: 20745929-20757888 Brachypodium distachyon
Bradi2g23200 10.0kb upstream 10.0kb upstream 10000 false Bd2: 20745929-20755928 Brachypodium distachyon
Bradi2g23200 10.0kb downstream 10.0kb downstream 11960 true Bd2: 20755929-20767888 Brachypodium distachyon
Bradi2g23200 10.0kb downstream 10.0kb downstream 10000 false Bd2: 20757889-20767888 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580442 5269 Grass View MSA
122043901 5273 Angiosperm View MSA
121347400 5274 Embryophyte View MSA
123425989 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.472     High  
cufflinks 8.726        
cufflinks 7.709        
cufflinks 7.682        
cufflinks 10.728     High  
cufflinks 15.495     High High
cufflinks 11.509     High  
cufflinks 15.834     High High
cufflinks 16.148     High High
cufflinks 12.395     High  
cufflinks 11.832     High  
cufflinks 12.043     High  
cufflinks 17.823     High High
cufflinks 14.767     High  
cufflinks 16.165     High High
cufflinks 13.872     High  
cufflinks 12.898     High  
cufflinks 2.856       Low
cufflinks 6.112        
cufflinks 4.592       Low
cufflinks 6.101        
cufflinks 11.559     High  
cufflinks 13.943     High  
cufflinks 15.824     High High
cufflinks 14.45     High  
cufflinks 10.238        
cufflinks 11.845     High  
cufflinks 9.215        
cufflinks 10.323        
cufflinks 8.845        

0 Strain