Gene : Bradi2g18820 B. distachyon v3.1
Defline:  (1 of 1) PTHR23416//PTHR23416:SF67 - SIALIC ACID SYNTHASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  2400
Name:  ? Bradi2g18820 Secondary Identifier:  ? PAC:32771140
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CYSTSYN-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6936 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g18820 0.5kb upstream 0.5kb upstream 1798 true Bd2: 16643136-16644933 Brachypodium distachyon
Bradi2g18820 0.5kb upstream 0.5kb upstream 500 false Bd2: 16643136-16643635 Brachypodium distachyon
Bradi2g18820 0.5kb downstream 0.5kb downstream 1798 true Bd2: 16643636-16645433 Brachypodium distachyon
Bradi2g18820 0.5kb downstream 0.5kb downstream 500 false Bd2: 16644934-16645433 Brachypodium distachyon
Bradi2g18820 1.0kb upstream 1.0kb upstream 2298 true Bd2: 16642636-16644933 Brachypodium distachyon
Bradi2g18820 1.0kb upstream 1.0kb upstream 1000 false Bd2: 16642636-16643635 Brachypodium distachyon
Bradi2g18820 1.0kb downstream 1.0kb downstream 2298 true Bd2: 16643636-16645933 Brachypodium distachyon
Bradi2g18820 1.0kb downstream 1.0kb downstream 1000 false Bd2: 16644934-16645933 Brachypodium distachyon
Bradi2g18820 2.0kb upstream 2.0kb upstream 3298 true Bd2: 16641636-16644933 Brachypodium distachyon
Bradi2g18820 2.0kb upstream 2.0kb upstream 2000 false Bd2: 16641636-16643635 Brachypodium distachyon
Bradi2g18820 2.0kb downstream 2.0kb downstream 3298 true Bd2: 16643636-16646933 Brachypodium distachyon
Bradi2g18820 2.0kb downstream 2.0kb downstream 2000 false Bd2: 16644934-16646933 Brachypodium distachyon
Bradi2g18820 5.0kb upstream 5.0kb upstream 6298 true Bd2: 16638636-16644933 Brachypodium distachyon
Bradi2g18820 5.0kb upstream 5.0kb upstream 5000 false Bd2: 16638636-16643635 Brachypodium distachyon
Bradi2g18820 5.0kb downstream 5.0kb downstream 6298 true Bd2: 16643636-16649933 Brachypodium distachyon
Bradi2g18820 5.0kb downstream 5.0kb downstream 5000 false Bd2: 16644934-16649933 Brachypodium distachyon
Bradi2g18820 10.0kb upstream 10.0kb upstream 11298 true Bd2: 16633636-16644933 Brachypodium distachyon
Bradi2g18820 10.0kb upstream 10.0kb upstream 10000 false Bd2: 16633636-16643635 Brachypodium distachyon
Bradi2g18820 10.0kb downstream 10.0kb downstream 11298 true Bd2: 16643636-16654933 Brachypodium distachyon
Bradi2g18820 10.0kb downstream 10.0kb downstream 10000 false Bd2: 16644934-16654933 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579116 5269 Grass View MSA
122047158 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.924       Low
cufflinks 7.885        
cufflinks 16.941     High High
cufflinks 8.4        
cufflinks 6.132       Low
cufflinks 7.299        
cufflinks 9.152        
cufflinks 8.87        
cufflinks 7.339        
cufflinks 27.294     High High
cufflinks 11.206     High  
cufflinks 6.28       Low
cufflinks 10.451     High  
cufflinks 11.49     High  
cufflinks 6.449       Low
cufflinks 8.089        
cufflinks 10.888        
cufflinks 6.808        
cufflinks 19.233     High High
cufflinks 6.259       Low
cufflinks 12.139     High  
cufflinks 17.404     High High
cufflinks 9.899     High  
cufflinks 8.613        
cufflinks 9.141        
cufflinks 19.395     High High
cufflinks 10.81     High  
cufflinks 27.134     High High
cufflinks 23.823     High High
cufflinks 7.295        

0 Strain