Gene : Bradi4g28310 B. distachyon v3.1
Defline:  (1 of 1) 1.1.1.35//4.2.1.17//4.2.1.55//5.1.2.3//5.3.3.8 - 3-hydroxyacyl-CoA dehydrogenase / Beta-keto-reductase // Enoyl-CoA hydratase / Unsaturated acyl-CoA hydratase // 3-hydroxybutyryl-CoA dehydratase / Crotonase // 3-hydroxybutyryl-CoA epimerase // Dodecenoyl-CoA isomerase / Dodecenoyl-CoA Delta-isomerase Genomic Order:  3617
Name:  ? Bradi4g28310 Secondary Identifier:  ? PAC:32782970
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

11 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ILEUDEG-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-5136 Brachypodium distachyon pathologic  
Bdistachyon PWY-5137 Brachypodium distachyon pathologic  
Bdistachyon PWY-5138 Brachypodium distachyon pathologic  
Bdistachyon PWY-561 Brachypodium distachyon pathologic  
Bdistachyon PWY-6435 Brachypodium distachyon pathologic  
Bdistachyon PWY-6837 Brachypodium distachyon pathologic  
Bdistachyon PWY-7036 Brachypodium distachyon pathologic  
Bdistachyon PWY-735 Brachypodium distachyon pathologic  
Bdistachyon PWY-7606 Brachypodium distachyon pathologic  
Bdistachyon VALDEG-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g28310 0.5kb upstream 0.5kb upstream 6648 true Bd4: 33569525-33576172 Brachypodium distachyon
Bradi4g28310 0.5kb upstream 0.5kb upstream 500 false Bd4: 33569525-33570024 Brachypodium distachyon
Bradi4g28310 0.5kb downstream 0.5kb downstream 6648 true Bd4: 33570025-33576672 Brachypodium distachyon
Bradi4g28310 0.5kb downstream 0.5kb downstream 500 false Bd4: 33576173-33576672 Brachypodium distachyon
Bradi4g28310 1.0kb upstream 1.0kb upstream 7148 true Bd4: 33569025-33576172 Brachypodium distachyon
Bradi4g28310 1.0kb upstream 1.0kb upstream 1000 false Bd4: 33569025-33570024 Brachypodium distachyon
Bradi4g28310 1.0kb downstream 1.0kb downstream 7148 true Bd4: 33570025-33577172 Brachypodium distachyon
Bradi4g28310 1.0kb downstream 1.0kb downstream 1000 false Bd4: 33576173-33577172 Brachypodium distachyon
Bradi4g28310 2.0kb upstream 2.0kb upstream 8148 true Bd4: 33568025-33576172 Brachypodium distachyon
Bradi4g28310 2.0kb upstream 2.0kb upstream 2000 false Bd4: 33568025-33570024 Brachypodium distachyon
Bradi4g28310 2.0kb downstream 2.0kb downstream 8148 true Bd4: 33570025-33578172 Brachypodium distachyon
Bradi4g28310 2.0kb downstream 2.0kb downstream 2000 false Bd4: 33576173-33578172 Brachypodium distachyon
Bradi4g28310 5.0kb upstream 5.0kb upstream 11148 true Bd4: 33565025-33576172 Brachypodium distachyon
Bradi4g28310 5.0kb upstream 5.0kb upstream 5000 false Bd4: 33565025-33570024 Brachypodium distachyon
Bradi4g28310 5.0kb downstream 5.0kb downstream 11148 true Bd4: 33570025-33581172 Brachypodium distachyon
Bradi4g28310 5.0kb downstream 5.0kb downstream 5000 false Bd4: 33576173-33581172 Brachypodium distachyon
Bradi4g28310 10.0kb upstream 10.0kb upstream 16148 true Bd4: 33560025-33576172 Brachypodium distachyon
Bradi4g28310 10.0kb upstream 10.0kb upstream 10000 false Bd4: 33560025-33570024 Brachypodium distachyon
Bradi4g28310 10.0kb downstream 10.0kb downstream 16148 true Bd4: 33570025-33586172 Brachypodium distachyon
Bradi4g28310 10.0kb downstream 10.0kb downstream 10000 false Bd4: 33576173-33586172 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568277 5269 Grass View MSA
122047259 5273 Angiosperm View MSA
121345387 5274 Embryophyte View MSA
123424743 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.55     High  
cufflinks 36.578     High High
cufflinks 34.944     High  
cufflinks 34.326     High  
cufflinks 16.765     High  
cufflinks 30.045     High  
cufflinks 30.702     High  
cufflinks 18.731     High  
cufflinks 25.525     High  
cufflinks 16.491     High  
cufflinks 12.927     High Low
cufflinks 31.139     High  
cufflinks 15.008     High Low
cufflinks 9.713     High Low
cufflinks 22.131     High  
cufflinks 28.729     High  
cufflinks 22.129     High  
cufflinks 31.265     High  
cufflinks 27.76     High  
cufflinks 9.744       Low
cufflinks 35.221     High  
cufflinks 26.628     High  
cufflinks 19.617     High  
cufflinks 25.904     High  
cufflinks 26.614     High  
cufflinks 29.047     High  
cufflinks 13.416     High Low
cufflinks 25.225     High  
cufflinks 24.28     High  
cufflinks 54.298     High High

0 Strain