Gene : Bradi2g19530 B. distachyon v3.1
Defline:  (1 of 1) PTHR12532:SF0 - TRANSCRIPTIONAL REGULATORY PROTEIN HAH1-RELATED Genomic Order:  2490
Name:  ? Bradi2g19530 Secondary Identifier:  ? PAC:32780098
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g19530 0.5kb upstream 0.5kb upstream 4288 true Bd2: 17188977-17193264 Brachypodium distachyon
Bradi2g19530 0.5kb upstream 0.5kb upstream 500 false Bd2: 17192765-17193264 Brachypodium distachyon
Bradi2g19530 0.5kb downstream 0.5kb downstream 4288 true Bd2: 17188477-17192764 Brachypodium distachyon
Bradi2g19530 0.5kb downstream 0.5kb downstream 500 false Bd2: 17188477-17188976 Brachypodium distachyon
Bradi2g19530 1.0kb upstream 1.0kb upstream 4788 true Bd2: 17188977-17193764 Brachypodium distachyon
Bradi2g19530 1.0kb upstream 1.0kb upstream 1000 false Bd2: 17192765-17193764 Brachypodium distachyon
Bradi2g19530 1.0kb downstream 1.0kb downstream 4788 true Bd2: 17187977-17192764 Brachypodium distachyon
Bradi2g19530 1.0kb downstream 1.0kb downstream 1000 false Bd2: 17187977-17188976 Brachypodium distachyon
Bradi2g19530 2.0kb upstream 2.0kb upstream 5788 true Bd2: 17188977-17194764 Brachypodium distachyon
Bradi2g19530 2.0kb upstream 2.0kb upstream 2000 false Bd2: 17192765-17194764 Brachypodium distachyon
Bradi2g19530 2.0kb downstream 2.0kb downstream 5788 true Bd2: 17186977-17192764 Brachypodium distachyon
Bradi2g19530 2.0kb downstream 2.0kb downstream 2000 false Bd2: 17186977-17188976 Brachypodium distachyon
Bradi2g19530 5.0kb upstream 5.0kb upstream 8788 true Bd2: 17188977-17197764 Brachypodium distachyon
Bradi2g19530 5.0kb upstream 5.0kb upstream 5000 false Bd2: 17192765-17197764 Brachypodium distachyon
Bradi2g19530 5.0kb downstream 5.0kb downstream 8788 true Bd2: 17183977-17192764 Brachypodium distachyon
Bradi2g19530 5.0kb downstream 5.0kb downstream 5000 false Bd2: 17183977-17188976 Brachypodium distachyon
Bradi2g19530 10.0kb upstream 10.0kb upstream 13788 true Bd2: 17188977-17202764 Brachypodium distachyon
Bradi2g19530 10.0kb upstream 10.0kb upstream 10000 false Bd2: 17192765-17202764 Brachypodium distachyon
Bradi2g19530 10.0kb downstream 10.0kb downstream 13788 true Bd2: 17178977-17192764 Brachypodium distachyon
Bradi2g19530 10.0kb downstream 10.0kb downstream 10000 false Bd2: 17178977-17188976 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579095 5269 Grass View MSA
122042716 5273 Angiosperm View MSA
121345418 5274 Embryophyte View MSA
123424346 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.056        
cufflinks 9.228        
cufflinks 8.078        
cufflinks 10.903     High High
cufflinks 5.347        
cufflinks 7.565        
cufflinks 8.54        
cufflinks 5.043       Low
cufflinks 6.89        
cufflinks 6.964        
cufflinks 4.125       Low
cufflinks 6.141        
cufflinks 4.259       Low
cufflinks 4.45       Low
cufflinks 5.692        
cufflinks 6.948        
cufflinks 7.752        
cufflinks 6.56        
cufflinks 8.914        
cufflinks 2.742       Low
cufflinks 10.405       High
cufflinks 6.368        
cufflinks 5.14        
cufflinks 6.653        
cufflinks 9.146        
cufflinks 9.078        
cufflinks 6.507        
cufflinks 8.306        
cufflinks 7.15        
cufflinks 9.326        

0 Strain