Gene : Bradi2g19680 B. distachyon v3.1
Defline:  (1 of 1) PTHR28141:SF1 - 2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE Genomic Order:  2505
Name:  ? Bradi2g19680 Secondary Identifier:  ? PAC:32778758
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g19680 0.5kb upstream 0.5kb upstream 1835 true Bd2: 17325632-17327466 Brachypodium distachyon
Bradi2g19680 0.5kb upstream 0.5kb upstream 500 false Bd2: 17326967-17327466 Brachypodium distachyon
Bradi2g19680 0.5kb downstream 0.5kb downstream 1835 true Bd2: 17325132-17326966 Brachypodium distachyon
Bradi2g19680 0.5kb downstream 0.5kb downstream 500 false Bd2: 17325132-17325631 Brachypodium distachyon
Bradi2g19680 1.0kb upstream 1.0kb upstream 2335 true Bd2: 17325632-17327966 Brachypodium distachyon
Bradi2g19680 1.0kb upstream 1.0kb upstream 1000 false Bd2: 17326967-17327966 Brachypodium distachyon
Bradi2g19680 1.0kb downstream 1.0kb downstream 2335 true Bd2: 17324632-17326966 Brachypodium distachyon
Bradi2g19680 1.0kb downstream 1.0kb downstream 1000 false Bd2: 17324632-17325631 Brachypodium distachyon
Bradi2g19680 2.0kb upstream 2.0kb upstream 3335 true Bd2: 17325632-17328966 Brachypodium distachyon
Bradi2g19680 2.0kb upstream 2.0kb upstream 2000 false Bd2: 17326967-17328966 Brachypodium distachyon
Bradi2g19680 2.0kb downstream 2.0kb downstream 3335 true Bd2: 17323632-17326966 Brachypodium distachyon
Bradi2g19680 2.0kb downstream 2.0kb downstream 2000 false Bd2: 17323632-17325631 Brachypodium distachyon
Bradi2g19680 5.0kb upstream 5.0kb upstream 6335 true Bd2: 17325632-17331966 Brachypodium distachyon
Bradi2g19680 5.0kb upstream 5.0kb upstream 5000 false Bd2: 17326967-17331966 Brachypodium distachyon
Bradi2g19680 5.0kb downstream 5.0kb downstream 6335 true Bd2: 17320632-17326966 Brachypodium distachyon
Bradi2g19680 5.0kb downstream 5.0kb downstream 5000 false Bd2: 17320632-17325631 Brachypodium distachyon
Bradi2g19680 10.0kb upstream 10.0kb upstream 11335 true Bd2: 17325632-17336966 Brachypodium distachyon
Bradi2g19680 10.0kb upstream 10.0kb upstream 10000 false Bd2: 17326967-17336966 Brachypodium distachyon
Bradi2g19680 10.0kb downstream 10.0kb downstream 11335 true Bd2: 17315632-17326966 Brachypodium distachyon
Bradi2g19680 10.0kb downstream 10.0kb downstream 10000 false Bd2: 17315632-17325631 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569486 5269 Grass View MSA
122041561 5273 Angiosperm View MSA
123429145 5275 Viridiplantae View MSA
121349919 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.322        
cufflinks 4.484        
cufflinks 3.396        
cufflinks 2.892        
cufflinks 3.345        
cufflinks 4.492        
cufflinks 5.689        
cufflinks 2.246       Low
cufflinks 2.343       Low
cufflinks 4.209        
cufflinks 5.34        
cufflinks 3.637        
cufflinks 4.633        
cufflinks 6.144        
cufflinks 1.932       Low
cufflinks 5.261        
cufflinks 5.749        
cufflinks 13.73     High High
cufflinks 10.702       High
cufflinks 2.083       Low
cufflinks 3.46        
cufflinks 2.993        
cufflinks 2.283       Low
cufflinks 2.831        
cufflinks 4.438        
cufflinks 4.057        
cufflinks 5.158        
cufflinks 4.551        
cufflinks 3.232        
cufflinks 2.15       Low

0 Strain