Gene : Bradi2g19960 B. distachyon v3.1
Defline:  (1 of 1) PTHR16517//PTHR16517:SF32 - TUBBY-RELATED // SUBFAMILY NOT NAMED Genomic Order:  2543
Name:  ? Bradi2g19960 Secondary Identifier:  ? PAC:32777607
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g19960 0.5kb upstream 0.5kb upstream 5604 true Bd2: 17550376-17555979 Brachypodium distachyon
Bradi2g19960 0.5kb upstream 0.5kb upstream 500 false Bd2: 17555480-17555979 Brachypodium distachyon
Bradi2g19960 0.5kb downstream 0.5kb downstream 5604 true Bd2: 17549876-17555479 Brachypodium distachyon
Bradi2g19960 0.5kb downstream 0.5kb downstream 500 false Bd2: 17549876-17550375 Brachypodium distachyon
Bradi2g19960 1.0kb upstream 1.0kb upstream 6104 true Bd2: 17550376-17556479 Brachypodium distachyon
Bradi2g19960 1.0kb upstream 1.0kb upstream 1000 false Bd2: 17555480-17556479 Brachypodium distachyon
Bradi2g19960 1.0kb downstream 1.0kb downstream 6104 true Bd2: 17549376-17555479 Brachypodium distachyon
Bradi2g19960 1.0kb downstream 1.0kb downstream 1000 false Bd2: 17549376-17550375 Brachypodium distachyon
Bradi2g19960 2.0kb upstream 2.0kb upstream 7104 true Bd2: 17550376-17557479 Brachypodium distachyon
Bradi2g19960 2.0kb upstream 2.0kb upstream 2000 false Bd2: 17555480-17557479 Brachypodium distachyon
Bradi2g19960 2.0kb downstream 2.0kb downstream 7104 true Bd2: 17548376-17555479 Brachypodium distachyon
Bradi2g19960 2.0kb downstream 2.0kb downstream 2000 false Bd2: 17548376-17550375 Brachypodium distachyon
Bradi2g19960 5.0kb upstream 5.0kb upstream 10104 true Bd2: 17550376-17560479 Brachypodium distachyon
Bradi2g19960 5.0kb upstream 5.0kb upstream 5000 false Bd2: 17555480-17560479 Brachypodium distachyon
Bradi2g19960 5.0kb downstream 5.0kb downstream 10104 true Bd2: 17545376-17555479 Brachypodium distachyon
Bradi2g19960 5.0kb downstream 5.0kb downstream 5000 false Bd2: 17545376-17550375 Brachypodium distachyon
Bradi2g19960 10.0kb upstream 10.0kb upstream 15104 true Bd2: 17550376-17565479 Brachypodium distachyon
Bradi2g19960 10.0kb upstream 10.0kb upstream 10000 false Bd2: 17555480-17565479 Brachypodium distachyon
Bradi2g19960 10.0kb downstream 10.0kb downstream 15104 true Bd2: 17540376-17555479 Brachypodium distachyon
Bradi2g19960 10.0kb downstream 10.0kb downstream 10000 false Bd2: 17540376-17550375 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569658 5269 Grass View MSA
122045291 5273 Angiosperm View MSA
123429062 5275 Viridiplantae View MSA
121310429 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.511     High  
cufflinks 9.883       Low
cufflinks 15.593     High  
cufflinks 10.327        
cufflinks 21.198     High  
cufflinks 7.462       Low
cufflinks 8.199       Low
cufflinks 16.137     High  
cufflinks 9.847     High Low
cufflinks 27.692     High High
cufflinks 13.123     High  
cufflinks 15.813     High  
cufflinks 11.797     High  
cufflinks 11.213     High  
cufflinks 19.762     High  
cufflinks 7.667       Low
cufflinks 14.776     High  
cufflinks 13.194     High  
cufflinks 27.586     High High
cufflinks 30.401     High High
cufflinks 17.572     High  
cufflinks 19.604     High  
cufflinks 15.386     High  
cufflinks 10.181     High Low
cufflinks 8.182       Low
cufflinks 19.4     High  
cufflinks 11.487     High  
cufflinks 23.514     High High
cufflinks 22.847     High High
cufflinks 13.907     High  

0 Strain