Gene : Bradi2g20030 B. distachyon v3.1
Defline:  (1 of 1) PTHR23139//PTHR23139:SF54 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  2551
Name:  ? Bradi2g20030 Secondary Identifier:  ? PAC:32773944
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g20030 0.5kb upstream 0.5kb upstream 4948 true Bd2: 17581149-17586096 Brachypodium distachyon
Bradi2g20030 0.5kb upstream 0.5kb upstream 500 false Bd2: 17585597-17586096 Brachypodium distachyon
Bradi2g20030 0.5kb downstream 0.5kb downstream 4948 true Bd2: 17580649-17585596 Brachypodium distachyon
Bradi2g20030 0.5kb downstream 0.5kb downstream 500 false Bd2: 17580649-17581148 Brachypodium distachyon
Bradi2g20030 1.0kb upstream 1.0kb upstream 5448 true Bd2: 17581149-17586596 Brachypodium distachyon
Bradi2g20030 1.0kb upstream 1.0kb upstream 1000 false Bd2: 17585597-17586596 Brachypodium distachyon
Bradi2g20030 1.0kb downstream 1.0kb downstream 5448 true Bd2: 17580149-17585596 Brachypodium distachyon
Bradi2g20030 1.0kb downstream 1.0kb downstream 1000 false Bd2: 17580149-17581148 Brachypodium distachyon
Bradi2g20030 2.0kb upstream 2.0kb upstream 6448 true Bd2: 17581149-17587596 Brachypodium distachyon
Bradi2g20030 2.0kb upstream 2.0kb upstream 2000 false Bd2: 17585597-17587596 Brachypodium distachyon
Bradi2g20030 2.0kb downstream 2.0kb downstream 6448 true Bd2: 17579149-17585596 Brachypodium distachyon
Bradi2g20030 2.0kb downstream 2.0kb downstream 2000 false Bd2: 17579149-17581148 Brachypodium distachyon
Bradi2g20030 5.0kb upstream 5.0kb upstream 9448 true Bd2: 17581149-17590596 Brachypodium distachyon
Bradi2g20030 5.0kb upstream 5.0kb upstream 5000 false Bd2: 17585597-17590596 Brachypodium distachyon
Bradi2g20030 5.0kb downstream 5.0kb downstream 9448 true Bd2: 17576149-17585596 Brachypodium distachyon
Bradi2g20030 5.0kb downstream 5.0kb downstream 5000 false Bd2: 17576149-17581148 Brachypodium distachyon
Bradi2g20030 10.0kb upstream 10.0kb upstream 14448 true Bd2: 17581149-17595596 Brachypodium distachyon
Bradi2g20030 10.0kb upstream 10.0kb upstream 10000 false Bd2: 17585597-17595596 Brachypodium distachyon
Bradi2g20030 10.0kb downstream 10.0kb downstream 14448 true Bd2: 17571149-17585596 Brachypodium distachyon
Bradi2g20030 10.0kb downstream 10.0kb downstream 10000 false Bd2: 17571149-17581148 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580002 5269 Grass View MSA
122047712 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310781 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.698        
cufflinks 6.908        
cufflinks 9.352       High
cufflinks 4.573        
cufflinks 4.262        
cufflinks 6.019        
cufflinks 6.634        
cufflinks 6.14        
cufflinks 6.011        
cufflinks 7.181        
cufflinks 6.468        
cufflinks 5.824        
cufflinks 5.301        
cufflinks 4.407        
cufflinks 3.707       Low
cufflinks 6.504        
cufflinks 5.521        
cufflinks 11.38       High
cufflinks 10.262       High
cufflinks 3.563       Low
cufflinks 7.372        
cufflinks 9.755       High
cufflinks 5.632        
cufflinks 5.687        
cufflinks 5.047        
cufflinks 8.455        
cufflinks 7.862        
cufflinks 9.251       High
cufflinks 9.083       High
cufflinks 7.041        

0 Strain