Gene : Bradi4g37520 B. distachyon v3.1
Defline:  (1 of 4) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  4837
Name:  ? Bradi4g37520 Secondary Identifier:  ? PAC:32790037
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CAROTENOID-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-6475 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g37520 0.5kb upstream 0.5kb upstream 3914 true Bd4: 42521097-42525010 Brachypodium distachyon
Bradi4g37520 0.5kb upstream 0.5kb upstream 500 false Bd4: 42524511-42525010 Brachypodium distachyon
Bradi4g37520 0.5kb downstream 0.5kb downstream 3914 true Bd4: 42520597-42524510 Brachypodium distachyon
Bradi4g37520 0.5kb downstream 0.5kb downstream 500 false Bd4: 42520597-42521096 Brachypodium distachyon
Bradi4g37520 1.0kb upstream 1.0kb upstream 4414 true Bd4: 42521097-42525510 Brachypodium distachyon
Bradi4g37520 1.0kb upstream 1.0kb upstream 1000 false Bd4: 42524511-42525510 Brachypodium distachyon
Bradi4g37520 1.0kb downstream 1.0kb downstream 4414 true Bd4: 42520097-42524510 Brachypodium distachyon
Bradi4g37520 1.0kb downstream 1.0kb downstream 1000 false Bd4: 42520097-42521096 Brachypodium distachyon
Bradi4g37520 2.0kb upstream 2.0kb upstream 5414 true Bd4: 42521097-42526510 Brachypodium distachyon
Bradi4g37520 2.0kb upstream 2.0kb upstream 2000 false Bd4: 42524511-42526510 Brachypodium distachyon
Bradi4g37520 2.0kb downstream 2.0kb downstream 5414 true Bd4: 42519097-42524510 Brachypodium distachyon
Bradi4g37520 2.0kb downstream 2.0kb downstream 2000 false Bd4: 42519097-42521096 Brachypodium distachyon
Bradi4g37520 5.0kb upstream 5.0kb upstream 8414 true Bd4: 42521097-42529510 Brachypodium distachyon
Bradi4g37520 5.0kb upstream 5.0kb upstream 5000 false Bd4: 42524511-42529510 Brachypodium distachyon
Bradi4g37520 5.0kb downstream 5.0kb downstream 8414 true Bd4: 42516097-42524510 Brachypodium distachyon
Bradi4g37520 5.0kb downstream 5.0kb downstream 5000 false Bd4: 42516097-42521096 Brachypodium distachyon
Bradi4g37520 10.0kb upstream 10.0kb upstream 13414 true Bd4: 42521097-42534510 Brachypodium distachyon
Bradi4g37520 10.0kb upstream 10.0kb upstream 10000 false Bd4: 42524511-42534510 Brachypodium distachyon
Bradi4g37520 10.0kb downstream 10.0kb downstream 13414 true Bd4: 42511097-42524510 Brachypodium distachyon
Bradi4g37520 10.0kb downstream 10.0kb downstream 10000 false Bd4: 42511097-42521096 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993341 5273 Angiosperm View MSA
124577513 5269 Grass View MSA
121263628 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.681        
cufflinks 0.809        
cufflinks 0.619        
cufflinks 0.601        
cufflinks 2.703       High
cufflinks 0.742        
cufflinks 0.844        
cufflinks 0.565        
cufflinks 0.76        
cufflinks 0.45       Low
cufflinks 0.664        
cufflinks 0.613        
cufflinks 0.806        
cufflinks 0.868        
cufflinks 0.38       Low
cufflinks 0.685        
cufflinks 0.525        
cufflinks 2.111       High
cufflinks 1.068        
cufflinks 1.834       High
cufflinks 1.349        
cufflinks 0.392       Low
cufflinks 0.512        
cufflinks 0.866        
cufflinks 0.916        
cufflinks 0.605        
cufflinks 1.331        
cufflinks 0.615        
cufflinks 0.491        
cufflinks 0.458       Low

0 Strain