Gene : Bradi2g27700 B. distachyon v3.1
Defline:  (1 of 3) K00949 - thiamine pyrophosphokinase (thiN, TPK1, THI80) Genomic Order:  3543
Name:  ? Bradi2g27700 Secondary Identifier:  ? PAC:32776778
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6908 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g27700 0.5kb upstream 0.5kb upstream 9775 true Bd2: 26563787-26573561 Brachypodium distachyon
Bradi2g27700 0.5kb upstream 0.5kb upstream 500 false Bd2: 26563787-26564286 Brachypodium distachyon
Bradi2g27700 0.5kb downstream 0.5kb downstream 9775 true Bd2: 26564287-26574061 Brachypodium distachyon
Bradi2g27700 0.5kb downstream 0.5kb downstream 500 false Bd2: 26573562-26574061 Brachypodium distachyon
Bradi2g27700 1.0kb upstream 1.0kb upstream 10275 true Bd2: 26563287-26573561 Brachypodium distachyon
Bradi2g27700 1.0kb upstream 1.0kb upstream 1000 false Bd2: 26563287-26564286 Brachypodium distachyon
Bradi2g27700 1.0kb downstream 1.0kb downstream 10275 true Bd2: 26564287-26574561 Brachypodium distachyon
Bradi2g27700 1.0kb downstream 1.0kb downstream 1000 false Bd2: 26573562-26574561 Brachypodium distachyon
Bradi2g27700 2.0kb upstream 2.0kb upstream 11275 true Bd2: 26562287-26573561 Brachypodium distachyon
Bradi2g27700 2.0kb upstream 2.0kb upstream 2000 false Bd2: 26562287-26564286 Brachypodium distachyon
Bradi2g27700 2.0kb downstream 2.0kb downstream 11275 true Bd2: 26564287-26575561 Brachypodium distachyon
Bradi2g27700 2.0kb downstream 2.0kb downstream 2000 false Bd2: 26573562-26575561 Brachypodium distachyon
Bradi2g27700 5.0kb upstream 5.0kb upstream 14275 true Bd2: 26559287-26573561 Brachypodium distachyon
Bradi2g27700 5.0kb upstream 5.0kb upstream 5000 false Bd2: 26559287-26564286 Brachypodium distachyon
Bradi2g27700 5.0kb downstream 5.0kb downstream 14275 true Bd2: 26564287-26578561 Brachypodium distachyon
Bradi2g27700 5.0kb downstream 5.0kb downstream 5000 false Bd2: 26573562-26578561 Brachypodium distachyon
Bradi2g27700 10.0kb upstream 10.0kb upstream 19275 true Bd2: 26554287-26573561 Brachypodium distachyon
Bradi2g27700 10.0kb upstream 10.0kb upstream 10000 false Bd2: 26554287-26564286 Brachypodium distachyon
Bradi2g27700 10.0kb downstream 10.0kb downstream 19275 true Bd2: 26564287-26583561 Brachypodium distachyon
Bradi2g27700 10.0kb downstream 10.0kb downstream 10000 false Bd2: 26573562-26583561 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570032 5269 Grass View MSA
122046316 5273 Angiosperm View MSA
121345006 5274 Embryophyte View MSA
123424730 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.323        
cufflinks 0.295        
cufflinks 0.306        
cufflinks 0.313        
cufflinks 0.503       High
cufflinks 0.155        
cufflinks 0.251        
cufflinks 0.142        
cufflinks 0.129        
cufflinks 0.166        
cufflinks 0.148        
cufflinks 0.138        
cufflinks 0.043     Low Low
cufflinks 0.078       Low
cufflinks 0.195        
cufflinks 0.239        
cufflinks 0.188        
cufflinks 0.209        
cufflinks 0.748       High
cufflinks 1.312       High
cufflinks 0.094     Low Low
cufflinks 0.123     Low  
cufflinks 0.112        
cufflinks 0.133        
cufflinks 0.202        
cufflinks 0.235        
cufflinks 0.052     Low Low
cufflinks 0.272        
cufflinks 0.177        
cufflinks 0.295        

0 Strain