Gene : Bradi4g30060 B. distachyon v3.1
Defline:  (1 of 2) PTHR21649//PTHR21649:SF4 - CHLOROPHYLL A/B BINDING PROTEIN Genomic Order:  3864
Name:  ? Bradi4g30060 Secondary Identifier:  ? PAC:32783131
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g30060 0.5kb upstream 0.5kb upstream 2517 true Bd4: 35656796-35659312 Brachypodium distachyon
Bradi4g30060 0.5kb upstream 0.5kb upstream 500 false Bd4: 35656796-35657295 Brachypodium distachyon
Bradi4g30060 0.5kb downstream 0.5kb downstream 2517 true Bd4: 35657296-35659812 Brachypodium distachyon
Bradi4g30060 0.5kb downstream 0.5kb downstream 500 false Bd4: 35659313-35659812 Brachypodium distachyon
Bradi4g30060 1.0kb upstream 1.0kb upstream 3017 true Bd4: 35656296-35659312 Brachypodium distachyon
Bradi4g30060 1.0kb upstream 1.0kb upstream 1000 false Bd4: 35656296-35657295 Brachypodium distachyon
Bradi4g30060 1.0kb downstream 1.0kb downstream 3017 true Bd4: 35657296-35660312 Brachypodium distachyon
Bradi4g30060 1.0kb downstream 1.0kb downstream 1000 false Bd4: 35659313-35660312 Brachypodium distachyon
Bradi4g30060 2.0kb upstream 2.0kb upstream 4017 true Bd4: 35655296-35659312 Brachypodium distachyon
Bradi4g30060 2.0kb upstream 2.0kb upstream 2000 false Bd4: 35655296-35657295 Brachypodium distachyon
Bradi4g30060 2.0kb downstream 2.0kb downstream 4017 true Bd4: 35657296-35661312 Brachypodium distachyon
Bradi4g30060 2.0kb downstream 2.0kb downstream 2000 false Bd4: 35659313-35661312 Brachypodium distachyon
Bradi4g30060 5.0kb upstream 5.0kb upstream 7017 true Bd4: 35652296-35659312 Brachypodium distachyon
Bradi4g30060 5.0kb upstream 5.0kb upstream 5000 false Bd4: 35652296-35657295 Brachypodium distachyon
Bradi4g30060 5.0kb downstream 5.0kb downstream 7017 true Bd4: 35657296-35664312 Brachypodium distachyon
Bradi4g30060 5.0kb downstream 5.0kb downstream 5000 false Bd4: 35659313-35664312 Brachypodium distachyon
Bradi4g30060 10.0kb upstream 10.0kb upstream 12017 true Bd4: 35647296-35659312 Brachypodium distachyon
Bradi4g30060 10.0kb upstream 10.0kb upstream 10000 false Bd4: 35647296-35657295 Brachypodium distachyon
Bradi4g30060 10.0kb downstream 10.0kb downstream 12017 true Bd4: 35657296-35669312 Brachypodium distachyon
Bradi4g30060 10.0kb downstream 10.0kb downstream 10000 false Bd4: 35659313-35669312 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588622 5269 Grass View MSA
122041547 5273 Angiosperm View MSA
121346524 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 486.241     High  
cufflinks 139.673     High  
cufflinks 2.386       Low
cufflinks 57.395     High  
cufflinks 248.456     High  
cufflinks 573.724     High  
cufflinks 471.28     High  
cufflinks 501.073     High  
cufflinks 522.067     High  
cufflinks 108.276     High  
cufflinks 193.974     High  
cufflinks 344.12     High  
cufflinks 808.699     High High
cufflinks 529.457     High  
cufflinks 434.658     High  
cufflinks 588.625     High  
cufflinks 866.466     High High
cufflinks 6.154       Low
cufflinks 148.136     High  
cufflinks 34.886     High  
cufflinks 308.05     High  
cufflinks 59.189     High  
cufflinks 412.046     High  
cufflinks 553.031     High  
cufflinks 601.311     High  
cufflinks 2.038       Low
cufflinks 507.354     High  
cufflinks 5.894       Low
cufflinks 24.141     High  
cufflinks 216.58     High  

0 Strain