Gene : Bradi2g25180 B. distachyon v3.1
Defline:  (1 of 21) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  3189
Name:  ? Bradi2g25180 Secondary Identifier:  ? PAC:32772877
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g25180 0.5kb upstream 0.5kb upstream 4758 true Bd2: 23080116-23084873 Brachypodium distachyon
Bradi2g25180 0.5kb upstream 0.5kb upstream 500 false Bd2: 23080116-23080615 Brachypodium distachyon
Bradi2g25180 0.5kb downstream 0.5kb downstream 4758 true Bd2: 23080616-23085373 Brachypodium distachyon
Bradi2g25180 0.5kb downstream 0.5kb downstream 500 false Bd2: 23084874-23085373 Brachypodium distachyon
Bradi2g25180 1.0kb upstream 1.0kb upstream 5258 true Bd2: 23079616-23084873 Brachypodium distachyon
Bradi2g25180 1.0kb upstream 1.0kb upstream 1000 false Bd2: 23079616-23080615 Brachypodium distachyon
Bradi2g25180 1.0kb downstream 1.0kb downstream 5258 true Bd2: 23080616-23085873 Brachypodium distachyon
Bradi2g25180 1.0kb downstream 1.0kb downstream 1000 false Bd2: 23084874-23085873 Brachypodium distachyon
Bradi2g25180 2.0kb upstream 2.0kb upstream 6258 true Bd2: 23078616-23084873 Brachypodium distachyon
Bradi2g25180 2.0kb upstream 2.0kb upstream 2000 false Bd2: 23078616-23080615 Brachypodium distachyon
Bradi2g25180 2.0kb downstream 2.0kb downstream 6258 true Bd2: 23080616-23086873 Brachypodium distachyon
Bradi2g25180 2.0kb downstream 2.0kb downstream 2000 false Bd2: 23084874-23086873 Brachypodium distachyon
Bradi2g25180 5.0kb upstream 5.0kb upstream 9258 true Bd2: 23075616-23084873 Brachypodium distachyon
Bradi2g25180 5.0kb upstream 5.0kb upstream 5000 false Bd2: 23075616-23080615 Brachypodium distachyon
Bradi2g25180 5.0kb downstream 5.0kb downstream 9258 true Bd2: 23080616-23089873 Brachypodium distachyon
Bradi2g25180 5.0kb downstream 5.0kb downstream 5000 false Bd2: 23084874-23089873 Brachypodium distachyon
Bradi2g25180 10.0kb upstream 10.0kb upstream 14258 true Bd2: 23070616-23084873 Brachypodium distachyon
Bradi2g25180 10.0kb upstream 10.0kb upstream 10000 false Bd2: 23070616-23080615 Brachypodium distachyon
Bradi2g25180 10.0kb downstream 10.0kb downstream 14258 true Bd2: 23080616-23094873 Brachypodium distachyon
Bradi2g25180 10.0kb downstream 10.0kb downstream 10000 false Bd2: 23084874-23094873 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026319 5273 Angiosperm View MSA
124573990 5269 Grass View MSA
121296277 5274 Embryophyte View MSA
123334471 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.127        
cufflinks 0.516       High
cufflinks 0.396        
cufflinks 0.398        
cufflinks 0.116        
cufflinks 0.33        
cufflinks 0.412        
cufflinks 0.176        
cufflinks 0.257        
cufflinks 0.167        
cufflinks 0.173        
cufflinks 0.24        
cufflinks 0.07       Low
cufflinks 0.086       Low
cufflinks 0.146        
cufflinks 0.315        
cufflinks 0.154     Low  
cufflinks 0.56       High
cufflinks 0.315        
cufflinks 0.009     Low Low
cufflinks 0.188        
cufflinks 0.206        
cufflinks 0.16        
cufflinks 0.192        
cufflinks 0.306        
cufflinks 0.259        
cufflinks 0.14        
cufflinks 0.243        
cufflinks 0.193        
cufflinks 0.298        

0 Strain