Gene : Bradi2g25240 B. distachyon v3.1
Defline:  (1 of 1) PTHR31742:SF1 - RPA-INTERACTING PROTEIN Genomic Order:  3195
Name:  ? Bradi2g25240 Secondary Identifier:  ? PAC:32779616
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g25240 0.5kb upstream 0.5kb upstream 5799 true Bd2: 23147524-23153322 Brachypodium distachyon
Bradi2g25240 0.5kb upstream 0.5kb upstream 500 false Bd2: 23152823-23153322 Brachypodium distachyon
Bradi2g25240 0.5kb downstream 0.5kb downstream 5799 true Bd2: 23147024-23152822 Brachypodium distachyon
Bradi2g25240 0.5kb downstream 0.5kb downstream 500 false Bd2: 23147024-23147523 Brachypodium distachyon
Bradi2g25240 1.0kb upstream 1.0kb upstream 6299 true Bd2: 23147524-23153822 Brachypodium distachyon
Bradi2g25240 1.0kb upstream 1.0kb upstream 1000 false Bd2: 23152823-23153822 Brachypodium distachyon
Bradi2g25240 1.0kb downstream 1.0kb downstream 6299 true Bd2: 23146524-23152822 Brachypodium distachyon
Bradi2g25240 1.0kb downstream 1.0kb downstream 1000 false Bd2: 23146524-23147523 Brachypodium distachyon
Bradi2g25240 2.0kb upstream 2.0kb upstream 7299 true Bd2: 23147524-23154822 Brachypodium distachyon
Bradi2g25240 2.0kb upstream 2.0kb upstream 2000 false Bd2: 23152823-23154822 Brachypodium distachyon
Bradi2g25240 2.0kb downstream 2.0kb downstream 7299 true Bd2: 23145524-23152822 Brachypodium distachyon
Bradi2g25240 2.0kb downstream 2.0kb downstream 2000 false Bd2: 23145524-23147523 Brachypodium distachyon
Bradi2g25240 5.0kb upstream 5.0kb upstream 10299 true Bd2: 23147524-23157822 Brachypodium distachyon
Bradi2g25240 5.0kb upstream 5.0kb upstream 5000 false Bd2: 23152823-23157822 Brachypodium distachyon
Bradi2g25240 5.0kb downstream 5.0kb downstream 10299 true Bd2: 23142524-23152822 Brachypodium distachyon
Bradi2g25240 5.0kb downstream 5.0kb downstream 5000 false Bd2: 23142524-23147523 Brachypodium distachyon
Bradi2g25240 10.0kb upstream 10.0kb upstream 15299 true Bd2: 23147524-23162822 Brachypodium distachyon
Bradi2g25240 10.0kb upstream 10.0kb upstream 10000 false Bd2: 23152823-23162822 Brachypodium distachyon
Bradi2g25240 10.0kb downstream 10.0kb downstream 15299 true Bd2: 23137524-23152822 Brachypodium distachyon
Bradi2g25240 10.0kb downstream 10.0kb downstream 10000 false Bd2: 23137524-23147523 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570074 5269 Grass View MSA
122044802 5273 Angiosperm View MSA
121346952 5274 Embryophyte View MSA
123424751 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.132       High
cufflinks 0.106        
cufflinks 0.101        
cufflinks 0.133       High
cufflinks 0.091        
cufflinks 0.098        
cufflinks 0.101        
cufflinks 0.089        
cufflinks 0.088     Low  
cufflinks 0.093     Low  
cufflinks 0.074       Low
cufflinks 0.11        
cufflinks 0.089        
cufflinks 0.097        
cufflinks 0.164       High
cufflinks 0.088     Low  
cufflinks 0.111     Low  
cufflinks 0.085     Low  
cufflinks 0.122     Low  
cufflinks 0.07     Low Low
cufflinks 0.083     Low  
cufflinks 0.095     Low  
cufflinks 0.086     Low  
cufflinks 0.098     Low  
cufflinks 0.114        
cufflinks 0.137       High
cufflinks 0.1        
cufflinks 0.11        
cufflinks 0.09     Low  
cufflinks 0.094     Low  

0 Strain