Gene : Bradi2g25550 B. distachyon v3.1
Defline:  (1 of 2) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  3242
Name:  ? Bradi2g25550 Secondary Identifier:  ? PAC:32774049
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7560 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g25550 0.5kb upstream 0.5kb upstream 5041 true Bd2: 23609777-23614817 Brachypodium distachyon
Bradi2g25550 0.5kb upstream 0.5kb upstream 500 false Bd2: 23609777-23610276 Brachypodium distachyon
Bradi2g25550 0.5kb downstream 0.5kb downstream 5041 true Bd2: 23610277-23615317 Brachypodium distachyon
Bradi2g25550 0.5kb downstream 0.5kb downstream 500 false Bd2: 23614818-23615317 Brachypodium distachyon
Bradi2g25550 1.0kb upstream 1.0kb upstream 5541 true Bd2: 23609277-23614817 Brachypodium distachyon
Bradi2g25550 1.0kb upstream 1.0kb upstream 1000 false Bd2: 23609277-23610276 Brachypodium distachyon
Bradi2g25550 1.0kb downstream 1.0kb downstream 5541 true Bd2: 23610277-23615817 Brachypodium distachyon
Bradi2g25550 1.0kb downstream 1.0kb downstream 1000 false Bd2: 23614818-23615817 Brachypodium distachyon
Bradi2g25550 2.0kb upstream 2.0kb upstream 6541 true Bd2: 23608277-23614817 Brachypodium distachyon
Bradi2g25550 2.0kb upstream 2.0kb upstream 2000 false Bd2: 23608277-23610276 Brachypodium distachyon
Bradi2g25550 2.0kb downstream 2.0kb downstream 6541 true Bd2: 23610277-23616817 Brachypodium distachyon
Bradi2g25550 2.0kb downstream 2.0kb downstream 2000 false Bd2: 23614818-23616817 Brachypodium distachyon
Bradi2g25550 5.0kb upstream 5.0kb upstream 9541 true Bd2: 23605277-23614817 Brachypodium distachyon
Bradi2g25550 5.0kb upstream 5.0kb upstream 5000 false Bd2: 23605277-23610276 Brachypodium distachyon
Bradi2g25550 5.0kb downstream 5.0kb downstream 9541 true Bd2: 23610277-23619817 Brachypodium distachyon
Bradi2g25550 5.0kb downstream 5.0kb downstream 5000 false Bd2: 23614818-23619817 Brachypodium distachyon
Bradi2g25550 10.0kb upstream 10.0kb upstream 14541 true Bd2: 23600277-23614817 Brachypodium distachyon
Bradi2g25550 10.0kb upstream 10.0kb upstream 10000 false Bd2: 23600277-23610276 Brachypodium distachyon
Bradi2g25550 10.0kb downstream 10.0kb downstream 14541 true Bd2: 23610277-23624817 Brachypodium distachyon
Bradi2g25550 10.0kb downstream 10.0kb downstream 10000 false Bd2: 23614818-23624817 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576691 5269 Grass View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.886     High  
cufflinks 35.85     High  
cufflinks 37.582     High  
cufflinks 31.096     High  
cufflinks 54.299     High  
cufflinks 52.543     High  
cufflinks 39.71     High  
cufflinks 48.476     High  
cufflinks 64.137     High  
cufflinks 61.441     High  
cufflinks 32.436     High  
cufflinks 75.676     High High
cufflinks 87.225     High High
cufflinks 62.695     High  
cufflinks 65.711     High  
cufflinks 51.609     High  
cufflinks 38.107     High  
cufflinks 4.641       Low
cufflinks 15.505     High Low
cufflinks 38.979     High  
cufflinks 24.445     High  
cufflinks 73.567     High High
cufflinks 44.867     High  
cufflinks 54.935     High  
cufflinks 48.709     High  
cufflinks 35.581     High  
cufflinks 36.737     High  
cufflinks 47.885     High  
cufflinks 65.65     High  
cufflinks 26.024     High  

0 Strain