Gene : Bradi2g25930 B. distachyon v3.1
Defline:  (1 of 1) 5.3.1.16 - 1-(5-phosphoribosyl)-5- ((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase / Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Genomic Order:  3297
Name:  ? Bradi2g25930 Secondary Identifier:  ? PAC:32778189
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon HISTSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g25930 0.5kb upstream 0.5kb upstream 5971 true Bd2: 24198130-24204100 Brachypodium distachyon
Bradi2g25930 0.5kb upstream 0.5kb upstream 500 false Bd2: 24203601-24204100 Brachypodium distachyon
Bradi2g25930 0.5kb downstream 0.5kb downstream 5971 true Bd2: 24197630-24203600 Brachypodium distachyon
Bradi2g25930 0.5kb downstream 0.5kb downstream 500 false Bd2: 24197630-24198129 Brachypodium distachyon
Bradi2g25930 1.0kb upstream 1.0kb upstream 6471 true Bd2: 24198130-24204600 Brachypodium distachyon
Bradi2g25930 1.0kb upstream 1.0kb upstream 1000 false Bd2: 24203601-24204600 Brachypodium distachyon
Bradi2g25930 1.0kb downstream 1.0kb downstream 6471 true Bd2: 24197130-24203600 Brachypodium distachyon
Bradi2g25930 1.0kb downstream 1.0kb downstream 1000 false Bd2: 24197130-24198129 Brachypodium distachyon
Bradi2g25930 2.0kb upstream 2.0kb upstream 7471 true Bd2: 24198130-24205600 Brachypodium distachyon
Bradi2g25930 2.0kb upstream 2.0kb upstream 2000 false Bd2: 24203601-24205600 Brachypodium distachyon
Bradi2g25930 2.0kb downstream 2.0kb downstream 7471 true Bd2: 24196130-24203600 Brachypodium distachyon
Bradi2g25930 2.0kb downstream 2.0kb downstream 2000 false Bd2: 24196130-24198129 Brachypodium distachyon
Bradi2g25930 5.0kb upstream 5.0kb upstream 10471 true Bd2: 24198130-24208600 Brachypodium distachyon
Bradi2g25930 5.0kb upstream 5.0kb upstream 5000 false Bd2: 24203601-24208600 Brachypodium distachyon
Bradi2g25930 5.0kb downstream 5.0kb downstream 10471 true Bd2: 24193130-24203600 Brachypodium distachyon
Bradi2g25930 5.0kb downstream 5.0kb downstream 5000 false Bd2: 24193130-24198129 Brachypodium distachyon
Bradi2g25930 10.0kb upstream 10.0kb upstream 15471 true Bd2: 24198130-24213600 Brachypodium distachyon
Bradi2g25930 10.0kb upstream 10.0kb upstream 10000 false Bd2: 24203601-24213600 Brachypodium distachyon
Bradi2g25930 10.0kb downstream 10.0kb downstream 15471 true Bd2: 24188130-24203600 Brachypodium distachyon
Bradi2g25930 10.0kb downstream 10.0kb downstream 10000 false Bd2: 24188130-24198129 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041281 5273 Angiosperm View MSA
124584289 5269 Grass View MSA
121347171 5274 Embryophyte View MSA
123424389 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.535        
cufflinks 3.693        
cufflinks 3.55        
cufflinks 3.426        
cufflinks 3.061        
cufflinks 2.579        
cufflinks 2.981        
cufflinks 2.41        
cufflinks 2.705        
cufflinks 3.623        
cufflinks 1.467       Low
cufflinks 2.438        
cufflinks 1.541       Low
cufflinks 1.194       Low
cufflinks 2.924        
cufflinks 2.514        
cufflinks 4.56       High
cufflinks 5.509       High
cufflinks 5.713       High
cufflinks 4.814       High
cufflinks 3.77        
cufflinks 3.779        
cufflinks 2.309        
cufflinks 2.341        
cufflinks 2.852        
cufflinks 3.735        
cufflinks 2.141        
cufflinks 4.313        
cufflinks 3.89        
cufflinks 3.71        

0 Strain