Gene : Bradi2g34052 B. distachyon v3.1
Defline:  (1 of 2) PTHR32370:SF16 - NON-PHOTOTROPIC HYPOCOTYL-LIKE PROTEIN Genomic Order:  4004
Name:  ? Bradi2g34052 Secondary Identifier:  ? PAC:32776703
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g34052 0.5kb upstream 0.5kb upstream 4831 true Bd2: 33892988-33897818 Brachypodium distachyon
Bradi2g34052 0.5kb upstream 0.5kb upstream 500 false Bd2: 33897319-33897818 Brachypodium distachyon
Bradi2g34052 0.5kb downstream 0.5kb downstream 4831 true Bd2: 33892488-33897318 Brachypodium distachyon
Bradi2g34052 0.5kb downstream 0.5kb downstream 500 false Bd2: 33892488-33892987 Brachypodium distachyon
Bradi2g34052 1.0kb upstream 1.0kb upstream 5331 true Bd2: 33892988-33898318 Brachypodium distachyon
Bradi2g34052 1.0kb upstream 1.0kb upstream 1000 false Bd2: 33897319-33898318 Brachypodium distachyon
Bradi2g34052 1.0kb downstream 1.0kb downstream 5331 true Bd2: 33891988-33897318 Brachypodium distachyon
Bradi2g34052 1.0kb downstream 1.0kb downstream 1000 false Bd2: 33891988-33892987 Brachypodium distachyon
Bradi2g34052 2.0kb upstream 2.0kb upstream 6331 true Bd2: 33892988-33899318 Brachypodium distachyon
Bradi2g34052 2.0kb upstream 2.0kb upstream 2000 false Bd2: 33897319-33899318 Brachypodium distachyon
Bradi2g34052 2.0kb downstream 2.0kb downstream 6331 true Bd2: 33890988-33897318 Brachypodium distachyon
Bradi2g34052 2.0kb downstream 2.0kb downstream 2000 false Bd2: 33890988-33892987 Brachypodium distachyon
Bradi2g34052 5.0kb upstream 5.0kb upstream 9331 true Bd2: 33892988-33902318 Brachypodium distachyon
Bradi2g34052 5.0kb upstream 5.0kb upstream 5000 false Bd2: 33897319-33902318 Brachypodium distachyon
Bradi2g34052 5.0kb downstream 5.0kb downstream 9331 true Bd2: 33887988-33897318 Brachypodium distachyon
Bradi2g34052 5.0kb downstream 5.0kb downstream 5000 false Bd2: 33887988-33892987 Brachypodium distachyon
Bradi2g34052 10.0kb upstream 10.0kb upstream 14331 true Bd2: 33892988-33907318 Brachypodium distachyon
Bradi2g34052 10.0kb upstream 10.0kb upstream 10000 false Bd2: 33897319-33907318 Brachypodium distachyon
Bradi2g34052 10.0kb downstream 10.0kb downstream 14331 true Bd2: 33882988-33897318 Brachypodium distachyon
Bradi2g34052 10.0kb downstream 10.0kb downstream 10000 false Bd2: 33882988-33892987 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588903 5269 Grass View MSA
122051145 5273 Angiosperm View MSA
121347829 5274 Embryophyte View MSA
123380647 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.281        
cufflinks 0.357        
cufflinks 0.438        
cufflinks 0.413        
cufflinks 0.183        
cufflinks 0.328        
cufflinks 0.389        
cufflinks 0.285        
cufflinks 0.343        
cufflinks 0.579        
cufflinks 0.004     Low Low
cufflinks 0.152        
cufflinks 0.016     Low Low
cufflinks 0.009     Low Low
cufflinks 0.059     Low  
cufflinks 0.391        
cufflinks 0.571        
cufflinks 0.214        
cufflinks 0.308        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.584        
cufflinks 0.44        
cufflinks 0.384        
cufflinks 0.329        
cufflinks 0.377        
cufflinks 0.454        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.434        
cufflinks 0.513        
cufflinks 0.529        

0 Strain