Gene : Bradi2g35180 B. distachyon v3.1
Defline:  (1 of 1) PTHR22937//PTHR22937:SF59 - RING FINGER CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  4149
Name:  ? Bradi2g35180 Secondary Identifier:  ? PAC:32778571
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g35180 0.5kb upstream 0.5kb upstream 6111 true Bd2: 35050002-35056112 Brachypodium distachyon
Bradi2g35180 0.5kb upstream 0.5kb upstream 500 false Bd2: 35050002-35050501 Brachypodium distachyon
Bradi2g35180 0.5kb downstream 0.5kb downstream 6111 true Bd2: 35050502-35056612 Brachypodium distachyon
Bradi2g35180 0.5kb downstream 0.5kb downstream 500 false Bd2: 35056113-35056612 Brachypodium distachyon
Bradi2g35180 1.0kb upstream 1.0kb upstream 6611 true Bd2: 35049502-35056112 Brachypodium distachyon
Bradi2g35180 1.0kb upstream 1.0kb upstream 1000 false Bd2: 35049502-35050501 Brachypodium distachyon
Bradi2g35180 1.0kb downstream 1.0kb downstream 6611 true Bd2: 35050502-35057112 Brachypodium distachyon
Bradi2g35180 1.0kb downstream 1.0kb downstream 1000 false Bd2: 35056113-35057112 Brachypodium distachyon
Bradi2g35180 2.0kb upstream 2.0kb upstream 7611 true Bd2: 35048502-35056112 Brachypodium distachyon
Bradi2g35180 2.0kb upstream 2.0kb upstream 2000 false Bd2: 35048502-35050501 Brachypodium distachyon
Bradi2g35180 2.0kb downstream 2.0kb downstream 7611 true Bd2: 35050502-35058112 Brachypodium distachyon
Bradi2g35180 2.0kb downstream 2.0kb downstream 2000 false Bd2: 35056113-35058112 Brachypodium distachyon
Bradi2g35180 5.0kb upstream 5.0kb upstream 10611 true Bd2: 35045502-35056112 Brachypodium distachyon
Bradi2g35180 5.0kb upstream 5.0kb upstream 5000 false Bd2: 35045502-35050501 Brachypodium distachyon
Bradi2g35180 5.0kb downstream 5.0kb downstream 10611 true Bd2: 35050502-35061112 Brachypodium distachyon
Bradi2g35180 5.0kb downstream 5.0kb downstream 5000 false Bd2: 35056113-35061112 Brachypodium distachyon
Bradi2g35180 10.0kb upstream 10.0kb upstream 15611 true Bd2: 35040502-35056112 Brachypodium distachyon
Bradi2g35180 10.0kb upstream 10.0kb upstream 10000 false Bd2: 35040502-35050501 Brachypodium distachyon
Bradi2g35180 10.0kb downstream 10.0kb downstream 15611 true Bd2: 35050502-35066112 Brachypodium distachyon
Bradi2g35180 10.0kb downstream 10.0kb downstream 10000 false Bd2: 35056113-35066112 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588328 5269 Grass View MSA
122049263 5273 Angiosperm View MSA
121311321 5274 Embryophyte View MSA
123348631 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.376     High  
cufflinks 22.005     High  
cufflinks 38.028     High High
cufflinks 23.634     High  
cufflinks 21.17     High  
cufflinks 21.041     High  
cufflinks 19.752     High Low
cufflinks 26.685     High  
cufflinks 23.716     High  
cufflinks 38.377     High High
cufflinks 38.883     High High
cufflinks 24.141     High  
cufflinks 26.772     High  
cufflinks 30.173     High  
cufflinks 30.028     High  
cufflinks 21.705     High  
cufflinks 19.47     High Low
cufflinks 19.499     High Low
cufflinks 25.744     High  
cufflinks 21.184     High  
cufflinks 21.929     High  
cufflinks 39.982     High High
cufflinks 26.543     High  
cufflinks 22.999     High  
cufflinks 19.199     High Low
cufflinks 39.697     High High
cufflinks 33.169     High High
cufflinks 42.941     High High
cufflinks 40.184     High High
cufflinks 18.719     High Low

0 Strain