Gene : Bradi4g08500 B. distachyon v3.1
Defline:  (1 of 4) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Genomic Order:  1122
Name:  ? Bradi4g08500 Secondary Identifier:  ? PAC:32789615
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CALVIN-PWY Brachypodium distachyon pathologic  
Bdistachyon PHOTOALL-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-5723 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g08500 0.5kb upstream 0.5kb upstream 6017 true Bd4: 7558483-7564499 Brachypodium distachyon
Bradi4g08500 0.5kb upstream 0.5kb upstream 500 false Bd4: 7564000-7564499 Brachypodium distachyon
Bradi4g08500 0.5kb downstream 0.5kb downstream 6017 true Bd4: 7557983-7563999 Brachypodium distachyon
Bradi4g08500 0.5kb downstream 0.5kb downstream 500 false Bd4: 7557983-7558482 Brachypodium distachyon
Bradi4g08500 1.0kb upstream 1.0kb upstream 6517 true Bd4: 7558483-7564999 Brachypodium distachyon
Bradi4g08500 1.0kb upstream 1.0kb upstream 1000 false Bd4: 7564000-7564999 Brachypodium distachyon
Bradi4g08500 1.0kb downstream 1.0kb downstream 6517 true Bd4: 7557483-7563999 Brachypodium distachyon
Bradi4g08500 1.0kb downstream 1.0kb downstream 1000 false Bd4: 7557483-7558482 Brachypodium distachyon
Bradi4g08500 2.0kb upstream 2.0kb upstream 7517 true Bd4: 7558483-7565999 Brachypodium distachyon
Bradi4g08500 2.0kb upstream 2.0kb upstream 2000 false Bd4: 7564000-7565999 Brachypodium distachyon
Bradi4g08500 2.0kb downstream 2.0kb downstream 7517 true Bd4: 7556483-7563999 Brachypodium distachyon
Bradi4g08500 2.0kb downstream 2.0kb downstream 2000 false Bd4: 7556483-7558482 Brachypodium distachyon
Bradi4g08500 5.0kb upstream 5.0kb upstream 10517 true Bd4: 7558483-7568999 Brachypodium distachyon
Bradi4g08500 5.0kb upstream 5.0kb upstream 5000 false Bd4: 7564000-7568999 Brachypodium distachyon
Bradi4g08500 5.0kb downstream 5.0kb downstream 10517 true Bd4: 7553483-7563999 Brachypodium distachyon
Bradi4g08500 5.0kb downstream 5.0kb downstream 5000 false Bd4: 7553483-7558482 Brachypodium distachyon
Bradi4g08500 10.0kb upstream 10.0kb upstream 15517 true Bd4: 7558483-7573999 Brachypodium distachyon
Bradi4g08500 10.0kb upstream 10.0kb upstream 10000 false Bd4: 7564000-7573999 Brachypodium distachyon
Bradi4g08500 10.0kb downstream 10.0kb downstream 15517 true Bd4: 7548483-7563999 Brachypodium distachyon
Bradi4g08500 10.0kb downstream 10.0kb downstream 10000 false Bd4: 7548483-7558482 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124590513 5269 Grass View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 843.885     High  
cufflinks 884.792     High  
cufflinks 931.702     High  
cufflinks 966.752     High  
cufflinks 930.132     High  
cufflinks 1028.891     High  
cufflinks 1008.293     High  
cufflinks 1080.841     High  
cufflinks 969.609     High  
cufflinks 1081.705     High  
cufflinks 398.005     High  
cufflinks 1012.855     High  
cufflinks 1559.94     High  
cufflinks 1017.249     High  
cufflinks 1165.942     High  
cufflinks 1186.181     High  
cufflinks 1115.146     High  
cufflinks 5.146       Low
cufflinks 515.559     High  
cufflinks 397.408     High  
cufflinks 543.428     High  
cufflinks 781.334     High  
cufflinks 887.628     High  
cufflinks 981.433     High  
cufflinks 989.12     High  
cufflinks 976.085     High  
cufflinks 870.283     High  
cufflinks 912.418     High  
cufflinks 921.728     High  
cufflinks 380.248     High  

0 Strain