Gene : Bradi4g39197 B. distachyon v3.1
Defline:  (1 of 4) 2.5.1.84 - All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) / Solanesyl-diphosphate synthase Genomic Order:  5047
Name:  ? Bradi4g39197 Secondary Identifier:  ? PAC:32790620
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5805 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g39197 0.5kb upstream 0.5kb upstream 4105 true Bd4: 43788672-43792776 Brachypodium distachyon
Bradi4g39197 0.5kb upstream 0.5kb upstream 500 false Bd4: 43788672-43789171 Brachypodium distachyon
Bradi4g39197 0.5kb downstream 0.5kb downstream 4105 true Bd4: 43789172-43793276 Brachypodium distachyon
Bradi4g39197 0.5kb downstream 0.5kb downstream 500 false Bd4: 43792777-43793276 Brachypodium distachyon
Bradi4g39197 1.0kb upstream 1.0kb upstream 4605 true Bd4: 43788172-43792776 Brachypodium distachyon
Bradi4g39197 1.0kb upstream 1.0kb upstream 1000 false Bd4: 43788172-43789171 Brachypodium distachyon
Bradi4g39197 1.0kb downstream 1.0kb downstream 4605 true Bd4: 43789172-43793776 Brachypodium distachyon
Bradi4g39197 1.0kb downstream 1.0kb downstream 1000 false Bd4: 43792777-43793776 Brachypodium distachyon
Bradi4g39197 2.0kb upstream 2.0kb upstream 5605 true Bd4: 43787172-43792776 Brachypodium distachyon
Bradi4g39197 2.0kb upstream 2.0kb upstream 2000 false Bd4: 43787172-43789171 Brachypodium distachyon
Bradi4g39197 2.0kb downstream 2.0kb downstream 5605 true Bd4: 43789172-43794776 Brachypodium distachyon
Bradi4g39197 2.0kb downstream 2.0kb downstream 2000 false Bd4: 43792777-43794776 Brachypodium distachyon
Bradi4g39197 5.0kb upstream 5.0kb upstream 8605 true Bd4: 43784172-43792776 Brachypodium distachyon
Bradi4g39197 5.0kb upstream 5.0kb upstream 5000 false Bd4: 43784172-43789171 Brachypodium distachyon
Bradi4g39197 5.0kb downstream 5.0kb downstream 8605 true Bd4: 43789172-43797776 Brachypodium distachyon
Bradi4g39197 5.0kb downstream 5.0kb downstream 5000 false Bd4: 43792777-43797776 Brachypodium distachyon
Bradi4g39197 10.0kb upstream 10.0kb upstream 13605 true Bd4: 43779172-43792776 Brachypodium distachyon
Bradi4g39197 10.0kb upstream 10.0kb upstream 10000 false Bd4: 43779172-43789171 Brachypodium distachyon
Bradi4g39197 10.0kb downstream 10.0kb downstream 13605 true Bd4: 43789172-43802776 Brachypodium distachyon
Bradi4g39197 10.0kb downstream 10.0kb downstream 10000 false Bd4: 43792777-43802776 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041065 5273 Angiosperm View MSA
124570565 5269 Grass View MSA
121345449 5274 Embryophyte View MSA
123424009 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.257     High  
cufflinks 45.342     High  
cufflinks 67.638     High  
cufflinks 62.921     High  
cufflinks 29.476     High  
cufflinks 37.916     High  
cufflinks 27.933     High  
cufflinks 52.203     High  
cufflinks 42.37     High  
cufflinks 74.68     High  
cufflinks 49.922     High  
cufflinks 49.675     High  
cufflinks 75.157     High  
cufflinks 70.822     High  
cufflinks 81.979     High  
cufflinks 39.546     High  
cufflinks 52.375     High  
cufflinks 1.486       Low
cufflinks 23.709     High  
cufflinks 22.888     High  
cufflinks 23.129     High  
cufflinks 76.171     High  
cufflinks 54.398     High  
cufflinks 49.617     High  
cufflinks 40.605     High  
cufflinks 75.226     High  
cufflinks 83.609     High  
cufflinks 78.687     High  
cufflinks 82.5     High  
cufflinks 16.039     High  

0 Strain