Gene : Bradi4g39090 B. distachyon v3.1
Defline:  (1 of 1) 1.14.11.33//4.2.99.18 - DNA oxidative demethylase / Alkylated DNA repair protein // DNA-(apurinic or apyrimidinic site) lyase / Phage-T4 UV endonuclease Genomic Order:  5034
Name:  ? Bradi4g39090 Secondary Identifier:  ? PAC:32788720
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g39090 0.5kb upstream 0.5kb upstream 5068 true Bd4: 43699690-43704757 Brachypodium distachyon
Bradi4g39090 0.5kb upstream 0.5kb upstream 500 false Bd4: 43704258-43704757 Brachypodium distachyon
Bradi4g39090 0.5kb downstream 0.5kb downstream 5068 true Bd4: 43699190-43704257 Brachypodium distachyon
Bradi4g39090 0.5kb downstream 0.5kb downstream 500 false Bd4: 43699190-43699689 Brachypodium distachyon
Bradi4g39090 1.0kb upstream 1.0kb upstream 5568 true Bd4: 43699690-43705257 Brachypodium distachyon
Bradi4g39090 1.0kb upstream 1.0kb upstream 1000 false Bd4: 43704258-43705257 Brachypodium distachyon
Bradi4g39090 1.0kb downstream 1.0kb downstream 5568 true Bd4: 43698690-43704257 Brachypodium distachyon
Bradi4g39090 1.0kb downstream 1.0kb downstream 1000 false Bd4: 43698690-43699689 Brachypodium distachyon
Bradi4g39090 2.0kb upstream 2.0kb upstream 6568 true Bd4: 43699690-43706257 Brachypodium distachyon
Bradi4g39090 2.0kb upstream 2.0kb upstream 2000 false Bd4: 43704258-43706257 Brachypodium distachyon
Bradi4g39090 2.0kb downstream 2.0kb downstream 6568 true Bd4: 43697690-43704257 Brachypodium distachyon
Bradi4g39090 2.0kb downstream 2.0kb downstream 2000 false Bd4: 43697690-43699689 Brachypodium distachyon
Bradi4g39090 5.0kb upstream 5.0kb upstream 9568 true Bd4: 43699690-43709257 Brachypodium distachyon
Bradi4g39090 5.0kb upstream 5.0kb upstream 5000 false Bd4: 43704258-43709257 Brachypodium distachyon
Bradi4g39090 5.0kb downstream 5.0kb downstream 9568 true Bd4: 43694690-43704257 Brachypodium distachyon
Bradi4g39090 5.0kb downstream 5.0kb downstream 5000 false Bd4: 43694690-43699689 Brachypodium distachyon
Bradi4g39090 10.0kb upstream 10.0kb upstream 14568 true Bd4: 43699690-43714257 Brachypodium distachyon
Bradi4g39090 10.0kb upstream 10.0kb upstream 10000 false Bd4: 43704258-43714257 Brachypodium distachyon
Bradi4g39090 10.0kb downstream 10.0kb downstream 14568 true Bd4: 43689690-43704257 Brachypodium distachyon
Bradi4g39090 10.0kb downstream 10.0kb downstream 10000 false Bd4: 43689690-43699689 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581923 5269 Grass View MSA
122044879 5273 Angiosperm View MSA
121344923 5274 Embryophyte View MSA
123425704 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.0        
cufflinks 5.694        
cufflinks 11.609     High  
cufflinks 5.113        
cufflinks 6.412        
cufflinks 8.638        
cufflinks 6.667        
cufflinks 11.468     High  
cufflinks 10.776     High  
cufflinks 23.518     High High
cufflinks 24.025     High High
cufflinks 12.508     High  
cufflinks 17.56     High High
cufflinks 16.345     High  
cufflinks 6.135        
cufflinks 8.797        
cufflinks 9.248        
cufflinks 3.948       Low
cufflinks 6.082        
cufflinks 3.218       Low
cufflinks 4.936        
cufflinks 34.708     High High
cufflinks 10.582     High  
cufflinks 8.675        
cufflinks 7.064        
cufflinks 14.137     High  
cufflinks 16.271     High  
cufflinks 20.227     High High
cufflinks 24.421     High High
cufflinks 4.509       Low

0 Strain