Gene : Bradi2g30510 B. distachyon v3.1
Defline:  (1 of 2) K00761 - uracil phosphoribosyltransferase (upp, UPRT) Genomic Order:  3691
Name:  ? Bradi2g30510 Secondary Identifier:  ? PAC:32781159
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7183 Brachypodium distachyon pathologic  
Bdistachyon PWY-7196 Brachypodium distachyon pathologic  
Bdistachyon PWY-7208 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi2g30510 0.5kb upstream 0.5kb upstream 3517 true Bd2: 29913629-29917145 Brachypodium distachyon
Bradi2g30510 0.5kb upstream 0.5kb upstream 500 false Bd2: 29916646-29917145 Brachypodium distachyon
Bradi2g30510 0.5kb downstream 0.5kb downstream 3517 true Bd2: 29913129-29916645 Brachypodium distachyon
Bradi2g30510 0.5kb downstream 0.5kb downstream 500 false Bd2: 29913129-29913628 Brachypodium distachyon
Bradi2g30510 1.0kb upstream 1.0kb upstream 4017 true Bd2: 29913629-29917645 Brachypodium distachyon
Bradi2g30510 1.0kb upstream 1.0kb upstream 1000 false Bd2: 29916646-29917645 Brachypodium distachyon
Bradi2g30510 1.0kb downstream 1.0kb downstream 4017 true Bd2: 29912629-29916645 Brachypodium distachyon
Bradi2g30510 1.0kb downstream 1.0kb downstream 1000 false Bd2: 29912629-29913628 Brachypodium distachyon
Bradi2g30510 2.0kb upstream 2.0kb upstream 5017 true Bd2: 29913629-29918645 Brachypodium distachyon
Bradi2g30510 2.0kb upstream 2.0kb upstream 2000 false Bd2: 29916646-29918645 Brachypodium distachyon
Bradi2g30510 2.0kb downstream 2.0kb downstream 5017 true Bd2: 29911629-29916645 Brachypodium distachyon
Bradi2g30510 2.0kb downstream 2.0kb downstream 2000 false Bd2: 29911629-29913628 Brachypodium distachyon
Bradi2g30510 5.0kb upstream 5.0kb upstream 8017 true Bd2: 29913629-29921645 Brachypodium distachyon
Bradi2g30510 5.0kb upstream 5.0kb upstream 5000 false Bd2: 29916646-29921645 Brachypodium distachyon
Bradi2g30510 5.0kb downstream 5.0kb downstream 8017 true Bd2: 29908629-29916645 Brachypodium distachyon
Bradi2g30510 5.0kb downstream 5.0kb downstream 5000 false Bd2: 29908629-29913628 Brachypodium distachyon
Bradi2g30510 10.0kb upstream 10.0kb upstream 13017 true Bd2: 29913629-29926645 Brachypodium distachyon
Bradi2g30510 10.0kb upstream 10.0kb upstream 10000 false Bd2: 29916646-29926645 Brachypodium distachyon
Bradi2g30510 10.0kb downstream 10.0kb downstream 13017 true Bd2: 29903629-29916645 Brachypodium distachyon
Bradi2g30510 10.0kb downstream 10.0kb downstream 10000 false Bd2: 29903629-29913628 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585714 5269 Grass View MSA
122047935 5273 Angiosperm View MSA
121345361 5274 Embryophyte View MSA
123424478 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.3        
cufflinks 0.346        
cufflinks 0.317        
cufflinks 0.366        
cufflinks 0.168        
cufflinks 0.3        
cufflinks 0.35        
cufflinks 0.33        
cufflinks 0.364        
cufflinks 0.247        
cufflinks 0.053     Low Low
cufflinks 0.26        
cufflinks 0.032     Low Low
cufflinks 0.053     Low Low
cufflinks 0.084       Low
cufflinks 0.304        
cufflinks 0.558       High
cufflinks 0.831       High
cufflinks 0.236        
cufflinks 0.211        
cufflinks 0.277        
cufflinks 0.245        
cufflinks 0.265        
cufflinks 0.265        
cufflinks 0.387        
cufflinks 0.272        
cufflinks 0.047     Low Low
cufflinks 0.223        
cufflinks 0.242        
cufflinks 0.315        

0 Strain