Gene : Bradi4g39227 B. distachyon v3.1
Defline:  (1 of 1) 1.3.99.22 - Coproporphyrinogen dehydrogenase / Oxygen-independent coproporphyrinogen-III oxidase Genomic Order:  5050
Name:  ? Bradi4g39227 Secondary Identifier:  ? PAC:32787837
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g39227 0.5kb upstream 0.5kb upstream 4379 true Bd4: 43803717-43808095 Brachypodium distachyon
Bradi4g39227 0.5kb upstream 0.5kb upstream 500 false Bd4: 43803717-43804216 Brachypodium distachyon
Bradi4g39227 0.5kb downstream 0.5kb downstream 4379 true Bd4: 43804217-43808595 Brachypodium distachyon
Bradi4g39227 0.5kb downstream 0.5kb downstream 500 false Bd4: 43808096-43808595 Brachypodium distachyon
Bradi4g39227 1.0kb upstream 1.0kb upstream 4879 true Bd4: 43803217-43808095 Brachypodium distachyon
Bradi4g39227 1.0kb upstream 1.0kb upstream 1000 false Bd4: 43803217-43804216 Brachypodium distachyon
Bradi4g39227 1.0kb downstream 1.0kb downstream 4879 true Bd4: 43804217-43809095 Brachypodium distachyon
Bradi4g39227 1.0kb downstream 1.0kb downstream 1000 false Bd4: 43808096-43809095 Brachypodium distachyon
Bradi4g39227 2.0kb upstream 2.0kb upstream 5879 true Bd4: 43802217-43808095 Brachypodium distachyon
Bradi4g39227 2.0kb upstream 2.0kb upstream 2000 false Bd4: 43802217-43804216 Brachypodium distachyon
Bradi4g39227 2.0kb downstream 2.0kb downstream 5879 true Bd4: 43804217-43810095 Brachypodium distachyon
Bradi4g39227 2.0kb downstream 2.0kb downstream 2000 false Bd4: 43808096-43810095 Brachypodium distachyon
Bradi4g39227 5.0kb upstream 5.0kb upstream 8879 true Bd4: 43799217-43808095 Brachypodium distachyon
Bradi4g39227 5.0kb upstream 5.0kb upstream 5000 false Bd4: 43799217-43804216 Brachypodium distachyon
Bradi4g39227 5.0kb downstream 5.0kb downstream 8879 true Bd4: 43804217-43813095 Brachypodium distachyon
Bradi4g39227 5.0kb downstream 5.0kb downstream 5000 false Bd4: 43808096-43813095 Brachypodium distachyon
Bradi4g39227 10.0kb upstream 10.0kb upstream 13879 true Bd4: 43794217-43808095 Brachypodium distachyon
Bradi4g39227 10.0kb upstream 10.0kb upstream 10000 false Bd4: 43794217-43804216 Brachypodium distachyon
Bradi4g39227 10.0kb downstream 10.0kb downstream 13879 true Bd4: 43804217-43818095 Brachypodium distachyon
Bradi4g39227 10.0kb downstream 10.0kb downstream 10000 false Bd4: 43808096-43818095 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588418 5269 Grass View MSA
122048362 5273 Angiosperm View MSA
121344861 5274 Embryophyte View MSA
123424755 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.656        
cufflinks 0.791        
cufflinks 0.591        
cufflinks 1.084       High
cufflinks 0.698        
cufflinks 0.44        
cufflinks 0.619        
cufflinks 0.728        
cufflinks 0.524        
cufflinks 0.508        
cufflinks 0.45        
cufflinks 0.418        
cufflinks 0.416        
cufflinks 0.628        
cufflinks 0.717        
cufflinks 0.498        
cufflinks 0.476        
cufflinks 0.237       Low
cufflinks 0.832        
cufflinks 1.733       High
cufflinks 0.352       Low
cufflinks 0.396        
cufflinks 0.769        
cufflinks 0.676        
cufflinks 0.596        
cufflinks 0.596        
cufflinks 0.524        
cufflinks 0.541        
cufflinks 0.449        
cufflinks 0.319       Low

0 Strain